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AT1G13570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.740
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56370.2); Has 1866 Blast hits to 1838 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1866; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:23158eggNOG:ENOG410IG7DeggNOG:ENOG411183NEMBL:AC027134
EMBL:AK118468EMBL:BT026442EMBL:CP002684EnsemblPlants:AT1G13570
EnsemblPlants:AT1G13570.1entrez:837918Gene3D:3.80.10.10GeneID:837918
Genevisible:Q9FZ70Gramene:AT1G13570.1hmmpanther:PTHR32212hmmpanther:PTHR32212:SF132
HOGENOM:HOG000090890InParanoid:Q9FZ70InterPro:IPR001810InterPro:IPR006566
InterPro:IPR013101InterPro:IPR032675iPTMnet:Q9FZ70KEGG:ath:AT1G13570
OMA:YELEFIRPaxDb:Q9FZ70Pfam:PF00646Pfam:PF07723
Pfam:PF08387Pfam:Q9FZ70Pfscan:PS50181PhylomeDB:Q9FZ70
PIR:G86268PRIDE:Q9FZ70PRO:PR:Q9FZ70PROSITE:PS50181
ProteinModelPortal:Q9FZ70Proteomes:UP000006548RefSeq:NP_172814.1SMART:SM00579
SMR:Q9FZ70SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT1G13570
UniGene:At.42960UniProt:Q9FZ70
Coordinates (TAIR10) chr1:-:4642528..4643930
Molecular Weight (calculated) 47607.80 Da
IEP (calculated) 4.63
GRAVY (calculated) 0.11
Length 416 amino acids
Sequence (TAIR10)
(BLAST)
001: MGESPDFISD LPQSIIENIL TRLSIRDAIR TSVLSSKWRY KWSTLTDLVF DEKCVSPSND RCVVETNLVR FITGVLLLHQ GPIHKFQLST SFKQCRPDID
101: QWLLFLSRNG IKELVLKLGE GEFRVPACLF NCLKLTCLEL CHCEFDPPQY FKGFSYLKSL NLHQILVAPE VIESLISGCP LLEFLSLSYF DSLVLSISAP
201: NLMYLYLDGE FKDIFLENTP KLVAISVSMY MHEDVTDFEQ SSDYNLVKFL GGVPLLEKLV GYIYFTKYLS IGDDPGRLPL TYIHLKTIEL YQVCFEDADE
301: VLVLLRLVTH SPNLKELKVS ASPVQPFPLE EEGFDLFERD YFDYKLPSLE SVKITDASGI RYELEFIRFL LGTSPVLETV TVSSSLSDKD AKMDMVIELL
401: RYPRVSPRAQ LLFLQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)