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AT1G09490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.893
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09480.1); Has 10413 Blast hits to 10399 proteins in 1719 species: Archae - 172; Bacteria - 4069; Metazoa - 410; Fungi - 939; Plants - 2479; Viruses - 15; Other Eukaryotes - 2329 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G09490-MONOMEReggNOG:COG0451eggNOG:KOG1502EMBL:AC003970
EMBL:AY087161EMBL:AY090369EMBL:AY122900EMBL:CP002684
EnsemblPlants:AT1G09490EnsemblPlants:AT1G09490.1entrez:837474ExpressionAtlas:O80532
Gene3D:3.40.50.720GeneID:837474GO:GO:0004022GO:GO:0050662
GO:GO:0055114Gramene:AT1G09490.1hmmpanther:PTHR10366hmmpanther:PTHR10366:SF362
HOGENOM:HOG000167998InterPro:IPR001509InterPro:IPR016040OMA:EMNEMIC
Pfam:PF01370PhylomeDB:O80532PIR:D86228Proteomes:UP000006548
RefSeq:NP_172420.1SMR:O80532STRING:3702.AT1G09490.1SUPFAM:SSF51735
TAIR:AT1G09490UniGene:At.42221UniProt:O80532
Coordinates (TAIR10) chr1:+:3064172..3065815
Molecular Weight (calculated) 35624.20 Da
IEP (calculated) 5.48
GRAVY (calculated) -0.02
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MNCGGKVVCV TGASGYIASW IVKLLLLRGY TVNATVRDPK DKKKTEHLLA LDGAKERLKL FKADLLEESS FDQAIDGCDA VFHTASPVLF TVTDPQTELI
101: DPALKGTINV LNTCKQVSSV KRVILTSSTA AVLSRQPPIG PNDLVDETFF SDPSLCRETK NWYSLSKILA ENAAWQFAKD NGIDMVVLNP GFICGPLLQP
201: TLNMSVELIV DFINGKNPFN KRYYRFSDVR DVALVHIKAL ETPSANGRYI IDGPNMSVND IIDILRKLFP DLSIADTNEE SEMNEMICQV CVEKVKNLGV
301: EFTPMKSSLR DTIVSLKEKC LL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)