AT1G09470.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1); Has 55019 Blast hits to 30094 proteins in 2088 species: Archae - 730; Bacteria - 6553; Metazoa - 28961; Fungi - 4800; Plants - 2559; Viruses - 111; Other Eukaryotes - 11305 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:3055391..3056931 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 39003.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.15 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||
| Length | 336 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPTSVSLRED DPLLKDLSEK KQSFRRNVVS LATELKEART RLAEQERSCS KEAMSRQEAE TRVKRMEDEM HELAKELNEK VEQIRASDVA TEKFVKELAD 101: IKSQLAATHA TAEASALSAE SAHSHCRVLS KQLHERTGSL KEHEDQVTRL GEQLENLRKE LRVRESSQKQ LRDELLKVEG DIMRAVSVVK TKENSEVRNM 201: LNEDTPKNSE RINKLLTAKD DEIARLRDEL KIISAHWRFK TKELEDQVEN QRRIDQELKK KVLKLEFCLR ETRIQTRKLQ KMGERNDVAI QELKEQLAAK 301: KQHEADHSSN QNLWDKSGFK IVVSMSMLIL VAFSRR |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)