AT1G08910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding;zinc ion binding | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 3001 (EMB3001); FUNCTIONS IN: zinc ion binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, MIZ-type (InterPro:IPR004181); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41580.1); Has 1002 Blast hits to 979 proteins in 199 species: Archae - 0; Bacteria - 25; Metazoa - 593; Fungi - 182; Plants - 101; Viruses - 6; Other Eukaryotes - 95 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:2856227..2860816 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91207.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.71 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 829 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVIPATSRFG FRAEFNTKEF QASCISLANE IDAAIGRNEV PGNIQELALI LNNVCRRKCD DYQTRAVVMA LMISVKSACQ LGWFPERETQ ELLAIIDLMW 101: NGFSCPENVT SCVNSPVTLI SQVIERFYPC VKLGHILVSF EAKPESKMMM KDFHISKKMP HSPKQKVGLF VVRTEDISRS NCIVHPQGVS FLLNGKGIDK 201: RVNISMESGP QLPTNVTALL NLGANLLQAI GCFGGSYLIA IAFMDVIPLP NKPLLKDYVH PEVVGSNSDC DIIEGPSRIS LSCPISRTRI KLPVKGHVCK 301: HLQCFDFWNY VNMNTRRHHG AARIILEEVG RNAADVVISA DGTWMVETEN DEDVELVPET THDHGDPNSF INLGPTVKNP ARDENEMETS TQVEEHNPCL 401: SEIQGPSNDT HRPASDYTML NQSHTSTNTL PQLPRTLNAF DGQQFVNLPQ VINTRDSPAS QALPMTFSPT PSPQDILATN AANFGTSMPA AQSSQFQGSH 501: VTSLGNCEGR TSDLMARWNH IYGRVQTQFP PAPLSHHHYS MQNQSPSPAQ QRPVPSYIAH PQTFHVNYGE NADQRWMPSS IAHPQTLPVN YGGNTNQRPI 601: PSSIAHPQTL PVNYRGNTDH RSTPYSITHL QTLLNYGGNA DQRPMPSSIT NLQTLPATYG GYAHQRPMSS SITHPRTSPV NYGGTPDQRP MPSSITHPQT 701: LPVSYGGTTD QILNPGGAMG QFSSREFMNL TPANTENWRP QSRMRGSVAP GTGYDHMIIH PTRPVHPQAQ TPPAPLSTSY DGADEIQAFI GHPSYPVSNN 801: ETQAGTSSLP VAEGLGYSGS FWSMPPETW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)