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AT1G07200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.820
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At1g07200-GFP
(full-length)		mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At1g07200-GFP
(full-length)		plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1); Has 14609 Blast hits to 14609 proteins in 2753 species: Archae - 17; Bacteria - 11747; Metazoa - 78; Fungi - 268; Plants - 440; Viruses - 0; Other Eukaryotes - 2059 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0542eggNOG:KOG1051EMBL:AY093144EMBL:BT008515
EMBL:CP002684EnsemblPlants:AT1G07200EnsemblPlants:AT1G07200.1entrez:837231
ExpressionAtlas:Q8RWE4Gene3D:3.40.50.300GeneID:837231GO:GO:0016787
Gramene:AT1G07200.1hmmpanther:PTHR11638hmmpanther:PTHR11638:SF68InterPro:IPR027417
PhylomeDB:Q8RWE4Proteomes:UP000006548RefSeq:NP_172200.2SMR:Q8RWE4
STRING:3702.AT1G07200.2SUPFAM:SSF52540TAIR:AT1G07200UniGene:At.27670
UniProt:Q8RWE4
Coordinates (TAIR10) chr1:-:2209033..2210301
Molecular Weight (calculated) 47044.20 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.29
Length 422 amino acids
Sequence (TAIR10)
(BLAST) 		001: MEDLTASVTN RTVSLPLSCV TTDFGLGVIY ASKNQESKTT REKPMLVTLN SSLEHTYQKD FKSLREILSR KVAWQTEAVN AISQIICGCK TDSTRRNQAS
101: GIWLALLGPD KVGKKKVAMT LSEVFFGGKV NYICVDFGAE HCSLDDKFRG KTVVDYVTGE LSRKPHSVVL LENVEKAEFP DQMRLSEAVS TGKIRDLHGR
201: VISMKNVIVV VTSGIAKDNA TDHVIKPVKF PEEQVLSARS WKLQIKLGDA TKFGVNKRKY ELETAQRAVK VQRSYLDLNL PVNETEFSPD HEAEDRDAWF
301: DEFIEKVDGK VTFKPVDFDE LAKNIQEKIG SHFERCFGSE THLELDKEVI LQILAASWSS LSSGEEEGRT IVDQWMQTVL ARSFAEAKQK YGSNPMLGVK
401: LVASSSGLAS GVELPAKVDV IW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)