AT1G04945.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.777 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HIT-type Zinc finger family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HIT-type Zinc finger family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 408 Blast hits to 406 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 151; Plants - 52; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:1400969..1402651 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42208.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.92 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||
| Length | 367 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKDSVCEECK QNPWKYKCPG CSIRSCALPC VKAHKQRTGC TGKRKFTDVV PLSKFDDNLL LSDYNMLEET KRVAESALRR RSQLCKNHYS YKLPYLLKSL 101: QSAAYSRRTK LWYLPSGMLK RENNQSRYDN RSKCISWTIE WRFHSTDVIL VDHGVGEDRN LCSVIKNHLK PGPWIHKLKP FCDVDLDSLK LFIRQYPKGA 201: KAPFKELDIK APLRKQLAKV VILEYPVIHV YLPSQSYEFK VIKDFNTTPN PNDSLYDGHG CTNGITFREE EIEEDDIDSF EPEVLGLMKQ MNYNPCLRVS 301: EKSKAEGVGT NNSNPQVDTT EQEDAGNMEL EFEQGLIDTY SDLFAEMNPD TDFIADGLDL EEGEIVE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)