AT1G02205.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.509 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Fatty acid hydroxylase superfamily | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
ECERIFERUM 1 (CER1); FUNCTIONS IN: aldehyde decarbonylase activity; INVOLVED IN: aldehyde catabolic process, wax biosynthetic process, cuticle development; LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1); Has 341 Blast hits to 339 proteins in 49 species: Archae - 0; Bacteria - 44; Metazoa - 0; Fungi - 0; Plants - 284; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:419650..422154 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 52980.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.84 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||
| Length | 461 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFDQMYAAV IHPFAEHIAY FILFAIPLLT TLLTKTASII SFAGYIIYID FMNNMGHCNF ELIPKRLFHL FPPLKFLCYT PSYHSLHHTQ FRTNYSLFMP 101: LYDYIYGTMD ESTDTLYEKT LERGDDIVDV VHLTHLTTPE SIYHLRIGLA SFASYPFAYR WFMRLLWPFT SLSMIFTLFY ARLFVAERNS FNKLNLQSWV 201: IPRYNLQYLL KWRKEAINNM IEKAILEADK KGVKVLSLGL MNQGEELNRN GEVYIHNHPD MKVRLVDGSR LAAAVVINSV PKATTSVVMT GNLTKVAYTI 301: ASALCQRGVQ VSTLRLDEYE KIRSCVPQEC RDHLVYLTSE ALSSNKVWLV GEGTTREEQE KATKGTLFIP FSQFPLKQLR RDCIYHTTPA LIVPKSLVNV 401: HSCENWLPRK AMSATRVAGI LHALEGWEMH ECGTSLLLSD LDQVWEACLS HGFQPLLLPH H |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)