AT1G02060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G37230.1); Has 43508 Blast hits to 14040 proteins in 293 species: Archae - 4; Bacteria - 48; Metazoa - 396; Fungi - 632; Plants - 41173; Viruses - 0; Other Eukaryotes - 1255 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:360918..363050 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80836.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.50 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 710 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSSVPKLHA LFVSKSQPVL RAAKVTNEER STKSKLARSL ARAVNSNPWS DELESSLSSL HPSQTISRTT VLQTLRLIKV PADGLRFFDW VSNKGFSHKE 101: QSFFLMLEFL GRARNLNVAR NFLFSIERRS NGCVKLQDRY FNSLIRSYGN AGLFQESVKL FQTMKQMGIS PSVLTFNSLL SILLKRGRTG MAHDLFDEMR 201: RTYGVTPDSY TFNTLINGFC KNSMVDEAFR IFKDMELYHC NPDVVTYNTI IDGLCRAGKV KIAHNVLSGM LKKATDVHPN VVSYTTLVRG YCMKQEIDEA 301: VLVFHDMLSR GLKPNAVTYN TLIKGLSEAH RYDEIKDILI GGNDAFTTFA PDACTFNILI KAHCDAGHLD AAMKVFQEML NMKLHPDSAS YSVLIRTLCM 401: RNEFDRAETL FNELFEKEVL LGKDECKPLA AAYNPMFEYL CANGKTKQAE KVFRQLMKRG VQDPPSYKTL ITGHCREGKF KPAYELLVLM LRREFVPDLE 501: TYELLIDGLL KIGEALLAHD TLQRMLRSSY LPVATTFHSV LAELAKRKFA NESFCLVTLM LEKRIRQNID LSTQVVRLLF SSAQKEKAFL IVRLLYDNGY 601: LVKMEELLGY LCENRKLLDA HTLVLFCLEK SQMVDIDTCN TVIEGLCKHK RHSEAFSLYN ELVELGNHQQ LSCHVVLRNA LEAAGKWEEL QFVSKRMATL 701: RESDDCSVLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)