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ATCG00720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : photosynthetic electron transfer B
Curator
Summary (TAIR10)
Encodes the cytochrome b(6) subunit of the cytochrome b6f complex.
Computational
Description (TAIR10)
photosynthetic electron transfer B (PETB); FUNCTIONS IN: heme binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: thylakoid, chloroplast thylakoid membrane, cytochrome b6f complex, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b/b6 (InterPro:IPR016175), Di-haem cytochrome, transmembrane (InterPro:IPR016174), Cytochrome b/b6, N-terminal (InterPro:IPR005797); BEST Arabidopsis thaliana protein match is: apocytochrome b (TAIR:ATMG00220.1).
Protein Annotations
BioCyc:ARA:GQT-2101-MONOMERBioGrid:29935eggNOG:COG1290eggNOG:KOG4663EMBL:AP000423EnsemblPlants:ATCG00720EnsemblPlants:ATCG00720.1
entrez:844729Gene3D:1.20.810.10GeneID:844729Genevisible:P56773GO:GO:0005506GO:GO:0009535GO:GO:0015979
GO:GO:0016021GO:GO:0016491GO:GO:0020037GO:GO:0022904GO:GO:0045158Gramene:ATCG00720.1HAMAP:MF_00633
hmmpanther:PTHR19271hmmpanther:PTHR19271:SF8HOGENOM:HOG000086791InParanoid:P56773IntAct:P56773InterPro:IPR005797InterPro:IPR016174
InterPro:IPR023530InterPro:IPR027387KEGG:ath:ArthCp053KO:K02635OMA:LHFLMIRPaxDb:P56773Pfam:P56773
Pfam:PF00033Pfam:PF13631Pfscan:PS51002PIRSF:PIRSF000032PRIDE:P56773PRO:PR:P56773PROSITE:PS51002
ProteinModelPortal:P56773Proteomes:UP000006548RefSeq:NP_051088.1SMR:P56773STRING:3702.ATCG00720.1SUPFAM:SSF81342TAIR:ATCG00720
tair10-symbols:PETBTCDB:3.D.3.5.2TMHMM:TMhelixUniProt:P56773
Coordinates (TAIR10) chrC:+:74841..76292
Molecular Weight (calculated) 24154.00 Da
IEP (calculated) 8.98
GRAVY (calculated) 0.57
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)