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ATCG00650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ribosomal protein S18
Curator
Summary (TAIR10)
chloroplast-encoded ribosomal protein S18
Computational
Description (TAIR10)
ribosomal protein S18 (RPS18); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid small ribosomal subunit, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S18, conserved site (InterPro:IPR018275), Ribosomal protein S18 (InterPro:IPR001648).
Protein Annotations
eggNOG:COG0238eggNOG:KOG3162EMBL:AP000423EnsemblPlants:ATCG00650EnsemblPlants:ATCG00650.1entrez:844736Gene3D:4.10.640.10
GeneID:844736Genevisible:P56807GO:GO:0003735GO:GO:0005840GO:GO:0006412GO:GO:0009570GO:GO:0019843
Gramene:ATCG00650.1HAMAP:MF_00270hmmpanther:PTHR13479HOGENOM:HOG000218466InParanoid:P56807InterPro:IPR001648InterPro:IPR018275
KEGG:ath:ArthCp044KO:K02963OMA:MAYYRKRPaxDb:P56807Pfam:P56807Pfam:PF01084PRIDE:P56807
PRINTS:PR00974PRO:PR:P56807ProDom:PD002239PROSITE:PS00057ProteinModelPortal:P56807Proteomes:UP000006548RefSeq:NP_051081.1
scanprosite:PS00057SMR:P56807STRING:3702.ATCG00650.1SUPFAM:SSF46911TAIR:ATCG00650tair10-symbols:RPS18TIGRfam:TIGR00165
TIGRFAMs:TIGR00165UniProt:P56807
Coordinates (TAIR10) chrC:+:67917..68222
Molecular Weight (calculated) 12061.00 Da
IEP (calculated) 12.67
GRAVY (calculated) -0.85
Length 101 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKSKRLFTK SKRSFRRRLP PIQSGDRIDY RNMSLISRFI SEQGKILSRR VNRVTLKQQR LITIAIKQAR ILSLLPFLNN QKQFERSEST PRTTSLRTRK
101: K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)