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ATCG00380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : chloroplast ribosomal protein S4
Curator
Summary (TAIR10)
Chloroplast encoded ribosomal protein S4
Computational
Description (TAIR10)
chloroplast ribosomal protein S4 (RPS4); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid small ribosomal subunit, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), Ribosomal protein S4, conserved site (InterPro:IPR018079), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4, bacterial-type (InterPro:IPR005709).
Protein Annotations
eggNOG:COG0522eggNOG:KOG3301EMBL:AP000423EnsemblPlants:ATCG00380EnsemblPlants:ATCG00380.1entrez:844765Gene3D:1.10.1050.10
Gene3D:3.10.290.10GeneID:844765Genevisible:P56799GO:GO:0003735GO:GO:0006412GO:GO:0009507GO:GO:0015935
GO:GO:0019843Gramene:ATCG00380.1HAMAP:MF_01306_Bhmmpanther:PTHR11831HOGENOM:HOG000221003InParanoid:P56799InterPro:IPR001912
InterPro:IPR002942InterPro:IPR005709InterPro:IPR018079InterPro:IPR022801KEGG:ath:ArthCp024KO:K02986OMA:EWVALQI
PANTHER:PTHR11831PaxDb:P56799Pfam:P56799Pfam:PF00163Pfam:PF01479Pfscan:PS50889PRIDE:P56799
PRO:PR:P56799PROSITE:PS00632PROSITE:PS50889ProteinModelPortal:P56799Proteomes:UP000006548RefSeq:NP_051061.1scanprosite:PS00632
SMART:SM00363SMART:SM01390SMR:P56799STRING:3702.ATCG00380.1SUPFAM:SSF55174TAIR:ATCG00380tair10-symbols:RPS4
TIGRfam:TIGR01017TIGRFAMs:TIGR01017UniProt:P56799
Coordinates (TAIR10) chrC:-:45223..45828
Molecular Weight (calculated) 23241.60 Da
IEP (calculated) 10.92
GRAVY (calculated) -0.49
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRYRGPRFK KIRRLGALPG LTSKRPKAGS DLRNQSRSVK KSQYRIRLEE KQKLRFHYGL TEHQLLKYVR IAGKAKGSTG QVLLQLLEMR LDNILFRLGM
101: ALTIPQARQL VNHGHILVNG RIVDIPSYRC KPRDIITVKD EQNSRTLVQN LLDSSAPEEL PNHLTLHTFQ YEGLVNQIID RKCVGLKINE LLVVEYYSRQ
201: T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)