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AT5G67570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Encodes a pentratricopeptide repeat containing protein that is targeted to the chloroplast. Mutants have pale young leave and reduced accumulation of plastid encoded transcripts suggesting a role for DG1 in regulation of plastid gene expression.
Computational
Description (TAIR10)
DELAYED GREENING 1 (DG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chloroplast organization, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G30610.2); Has 18472 Blast hits to 7295 proteins in 194 species: Archae - 0; Bacteria - 17; Metazoa - 30; Fungi - 92; Plants - 17734; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink).
Protein Annotations
BioGrid:22135eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB013390EMBL:AK222112EMBL:CP002688EnsemblPlants:AT5G67570
EnsemblPlants:AT5G67570.1entrez:836893Gene3D:1.25.40.10GeneID:836893Genevisible:Q9FJW6GO:GO:0009507GO:GO:0042793
Gramene:AT5G67570.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF427HOGENOM:HOG000241348InParanoid:Q9FJW6InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT5G67570ncoils:CoilOMA:HCAPNIGPaxDb:Q9FJW6Pfam:PF01535Pfam:PF13041Pfam:PF13812
Pfam:Q9FJW6Pfscan:PS51375PhylomeDB:Q9FJW6PRIDE:Q9FJW6PRO:PR:Q9FJW6PROSITE:PS51375ProteinModelPortal:Q9FJW6
Proteomes:UP000006548RefSeq:NP_201558.3SMR:Q9FJW6STRING:3702.AT5G67570.1TAIR:AT5G67570tair10-symbols:DG1tair10-symbols:EMB1408
tair10-symbols:EMB246TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.28806UniProt:Q9FJW6
Coordinates (TAIR10) chr5:+:26952352..26955480
Molecular Weight (calculated) 92063.80 Da
IEP (calculated) 5.25
GRAVY (calculated) -0.56
Length 798 amino acids
Sequence (TAIR10)
(BLAST)
001: MDASVVRFSQ SPARVPPEFE PDMEKIKRRL LKYGVDPTPK ILNNLRKKEI QKHNRRTKRE TESEAEVYTE AQKQSMEEEA RFQTLRREYK QFTRSISGKR
101: GGDVGLMVGN PWEGIERVKL KELVSGVRRE EVSAGELKKE NLKELKKILE KDLRWVLDDD VDVEEFDLDK EFDPAKRWRN EGEAVRVLVD RLSGREINEK
201: HWKFVRMMNQ SGLQFTEDQM LKIVDRLGRK QSWKQASAVV HWVYSDKKRK HLRSRFVYTK LLSVLGFARR PQEALQIFNQ MLGDRQLYPD MAAYHCIAVT
301: LGQAGLLKEL LKVIERMRQK PTKLTKNLRQ KNWDPVLEPD LVVYNAILNA CVPTLQWKAV SWVFVELRKN GLRPNGATYG LAMEVMLESG KFDRVHDFFR
401: KMKSSGEAPK AITYKVLVRA LWREGKIEEA VEAVRDMEQK GVIGTGSVYY ELACCLCNNG RWCDAMLEVG RMKRLENCRP LEITFTGLIA ASLNGGHVDD
501: CMAIFQYMKD KCDPNIGTAN MMLKVYGRND MFSEAKELFE EIVSRKETHL VPNEYTYSFM LEASARSLQW EYFEHVYQTM VLSGYQMDQT KHASMLIEAS
601: RAGKWSLLEH AFDAVLEDGE IPHPLFFTEL LCHATAKGDF QRAITLINTV ALASFQISEE EWTDLFEEHQ DWLTQDNLHK LSDHLIECDY VSEPTVSNLS
701: KSLKSRCGSS SSSAQPLLAV DVTTQSQGEK PEEDLLLQDT TMEDDNSANG EAWEFTETEL ETLGLEELEI DDDEESSDSD SLSVYDILKE WEESSKKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)