suba logo
AT5G66530.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Galactose mutarotase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose mutarotase-like superfamily protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G57330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2401-MONOMERBioCyc:ARA:GQT-2402-MONOMEReggNOG:COG0676eggNOG:KOG1594EMBL:AB013389EMBL:AY120711EMBL:BT000037
EMBL:CP002688EnsemblPlants:AT5G66530EnsemblPlants:AT5G66530.1EnsemblPlants:AT5G66530.2entrez:836785Gene3D:2.70.98.10GeneID:836785
GO:GO:0005975GO:GO:0009507GO:GO:0009570GO:GO:0016853GO:GO:0030246GO:GO:0048046Gramene:AT5G66530.1
Gramene:AT5G66530.2hmmpanther:PTHR11122hmmpanther:PTHR11122:SF12HOGENOM:HOG000283048IntAct:Q9FJY6InterPro:IPR008183InterPro:IPR011013
InterPro:IPR014718InterPro:IPR025532KEGG:ath:AT5G66530KO:K01792OMA:TNTDDKPPfam:PF01263PhylomeDB:Q9FJY6
PIRSF:PIRSF016020Proteomes:UP000006548RefSeq:NP_001190635.1RefSeq:NP_201454.1SMR:Q9FJY6STRING:3702.AT5G66530.1SUPFAM:SSF74650
TAIR:AT5G66530UniGene:At.19798UniProt:Q9FJY6
Coordinates (TAIR10) chr5:-:26553821..26555575
Molecular Weight (calculated) 33693.80 Da
IEP (calculated) 5.73
GRAVY (calculated) -0.25
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIVSVSNSF LTFNSPNQLR FSRRRFSAMA SSTTGVRVAE GEGNLPKLVL TSPQNSEAEI YLFGGCITSW KVASGKDLLF VRPDAVFNKI KPISGGIPHC
101: FPQFGPGLIQ QHGFGRNMDW SVVDSQNADD NAAVTLELKD GPYSRAMWDF AFQALYKVIV GADSLSTELK ITNTDDKPFS FSTALHTYFR ASSAGASVRG
201: LKGCKTLNKD PDPKNPIEGK EDRDAVTFPG FVDTVYLDAP NELQFDNGLG DKIIIKNTNW SDAVLWNPHT QMEACYRDFV CVENAKLGDV KLEPGQSWTA
301: TQLLSIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)