suba logo
AT5G65220.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L29 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, nucleoid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21889eggNOG:COG0255eggNOG:KOG3436EMBL:AB013395EMBL:AY045966EMBL:AY079351EMBL:AY085663
EMBL:CP002688EnsemblPlants:AT5G65220EnsemblPlants:AT5G65220.1entrez:836647EvolutionaryTrace:Q9FJP3ExpressionAtlas:Q9FJP3Gene3D:1.10.287.310
GeneID:836647Genevisible:Q9FJP3GO:GO:0003735GO:GO:0005840GO:GO:0006412GO:GO:0009295GO:GO:0009507
GO:GO:0009570GO:GO:0009941Gramene:AT5G65220.1HAMAP:MF_00374hmmpanther:PTHR10916hmmpanther:PTHR10916:SF0HOGENOM:HOG000239499
InParanoid:Q9FJP3IntAct:Q9FJP3InterPro:IPR001854iPTMnet:Q9FJP3KEGG:ath:AT5G65220KO:K02904OMA:DFRRMKK
PaxDb:Q9FJP3Pfam:PF00831Pfam:Q9FJP3PhylomeDB:Q9FJP3PRIDE:Q9FJP3PRO:PR:Q9FJP3ProteinModelPortal:Q9FJP3
Proteomes:UP000006548RefSeq:NP_201325.1SMR:Q9FJP3STRING:3702.AT5G65220.1SUPFAM:SSF46561TAIR:AT5G65220TIGRfam:TIGR00012
TIGRFAMs:TIGR00012UniGene:At.24943UniGene:At.67840UniProt:B9DH43UniProt:Q9FJP3
Coordinates (TAIR10) chr5:+:26061301..26062506
Molecular Weight (calculated) 19378.50 Da
IEP (calculated) 11.26
GRAVY (calculated) -0.64
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSLSIATPG TAAIFRRGTA SATSTSSSFH GVRIQHQVSA RVPAAATISS SSPKPSVVMM SKREAELKEI RSKTTEQLQE EVVDLKGELF MLRLQKSARN
101: EFKSSDFRRM KKQVARMLTV KREREIKEGI KKRLSRKLDR QWKKSIVPRP PPSLKKLQEE EAAEEAAEAA KSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)