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AT5G61540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: asparaginase activity, hydrolase activity; INVOLVED IN: glycoprotein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G61540-MONOMERBioCyc:ARA:GQT-1742-MONOMERBioCyc:ARA:GQT-1743-MONOMEREC:3.4.19.5
eggNOG:COG1446eggNOG:KOG1593EMBL:AB012239EMBL:AK222183
EMBL:AK230301EMBL:BT020388EMBL:BT022060EMBL:CP002688
EnsemblPlants:AT5G61540EnsemblPlants:AT5G61540.1entrez:836275GeneID:836275
Genevisible:Q56W64GO:GO:0008798gramene_plant_reactome:1119393gramene_plant_reactome:6876473
hmmpanther:PTHR10188hmmpanther:PTHR10188:SF6HOGENOM:HOG000174614InParanoid:Q56W64
InterPro:IPR000246InterPro:IPR029055KEGG:ath:AT5G61540KO:K01444
MEROPS:T02.001OMA:KFFGAVIPANTHER:PTHR10188PaxDb:Q56W64
Pfam:PF01112Pfam:Q56W64PhylomeDB:Q56W64PRIDE:Q56W64
PRO:PR:Q56W64ProteinModelPortal:Q56W64Proteomes:UP000006548RefSeq:NP_001032119.1
RefSeq:NP_200962.2RefSeq:NP_974974.1SMR:Q56W64STRING:3702.AT5G61540.1
SUPFAM:SSF56235TAIR:AT5G61540TMHMM:TMhelixUniGene:At.50546
UniProt:Q56W64
Coordinates (TAIR10) chr5:+:24744994..24747142
Molecular Weight (calculated) 38251.60 Da
IEP (calculated) 4.64
GRAVY (calculated) -0.05
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MARSDVLIFV STLLLFLSLL TVADAELVKS DKFPVVVSTW PFLEAVRAAW RAVDNGSSAV EAVVEGCSAC EELRCDGTVG PGGSPDENGE TMIDALVMDG
101: VTMEVGAVAA MRYVKDGIRA AHLVMKYSQH TLLAGEGASA FAISMGLPGP MNLSSPESVK KWSDWKENQC QPNFRKNVVP ANDCGPYKPN NSAMNVFVDK
201: STESCEMGAI EYKPPLVGPH NHDTISMAVI DRMGHIAVGT STNGATYKIP GRVGDGPIVG SSAYADDEVG GCGATGDGDT MMRFLPCYQV VESMRQGMKP
301: EEAAKDAISR IARKFPDFVG AVVAVDKNGS HAGACYGWTF QYSVQNPDMN DVQVFTVLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)