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AT5G55190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAN GTPase 3
Curator
Summary (TAIR10)
A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.
Computational
Description (TAIR10)
RAN GTPase 3 (RAN3); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: protein import into nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAS-related nuclear protein-1 (TAIR:AT5G20010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G55190-MONOMERBioGrid:20856eggNOG:ENOG410XNRSeggNOG:KOG0096EMBL:AB010071EMBL:AF017991EMBL:AY042796
EMBL:AY050317EMBL:AY116939EMBL:BT000723EMBL:CP002688EMBL:U73810EMBL:U75601EMBL:X97381
EnsemblPlants:AT5G55190EnsemblPlants:AT5G55190.1entrez:835612Gene3D:3.40.50.300GeneID:835612Genevisible:Q8H156GO:GO:0000054
GO:GO:0003924GO:GO:0005525GO:GO:0005634GO:GO:0005794GO:GO:0006606GO:GO:0007264GO:GO:0009506
Gramene:AT5G55190.1hmmpanther:PTHR24071HOGENOM:HOG000216664InParanoid:Q8H156IntAct:Q8H156InterPro:IPR001806InterPro:IPR002041
InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT5G55190KO:K07936OMA:HRKRNLQPaxDb:Q8H156Pfam:PF00071
Pfam:Q8H156Pfscan:PS51418PhylomeDB:Q8H156PRIDE:Q8H156PRINTS:PR00627PRO:PR:Q8H156PROSITE:PS51418
ProteinModelPortal:Q8H156Proteomes:UP000006548Reactome:R-ATH-203927RefSeq:NP_200330.1SMR:Q8H156STRING:3702.AT5G55190.1SUPFAM:SSF52540
TAIR:AT5G55190tair10-symbols:ATRAN3tair10-symbols:RAN3TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.20354UniProt:Q8H156
Coordinates (TAIR10) chr5:+:22392285..22393957
Molecular Weight (calculated) 25080.80 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.42
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDANLHFV ESPALAPPEV QIDLAAQQQH
201: EAELAAAASQ PLPDDDDDTF E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)