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AT5G52120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.917
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phloem protein 2-A14
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
phloem protein 2-A14 (PP2-A14); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-A13 (TAIR:AT3G61060.1); Has 417 Blast hits to 411 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 417; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:20533eggNOG:ENOG410IG7CeggNOG:ENOG410Y934EMBL:AB015478
EMBL:AB025603EMBL:AY072088EMBL:AY096374EMBL:CP002688
EnsemblPlants:AT5G52120EnsemblPlants:AT5G52120.1entrez:835288GeneID:835288
Genevisible:Q9FJ80GO:GO:0005634GO:GO:0016567GO:GO:0030246
Gramene:AT5G52120.1hmmpanther:PTHR31960hmmpanther:PTHR31960:SF5HOGENOM:HOG000239667
InParanoid:Q9FJ80IntAct:Q9FJ80InterPro:IPR001810InterPro:IPR025886
KEGG:ath:AT5G52120OMA:ENCITAMPaxDb:Q9FJ80Pfam:PF14299
Pfam:Q9FJ80Pfscan:PS50181PhylomeDB:Q9FJ80PRIDE:Q9FJ80
PRO:PR:Q9FJ80PROSITE:PS50181ProteinModelPortal:Q9FJ80Proteomes:UP000006548
RefSeq:NP_200025.1STRING:3702.AT5G52120.1SUPFAM:SSF81383TAIR:AT5G52120
tair10-symbols:AtPP2-A14tair10-symbols:PP2-A14UniGene:At.29636UniPathway:UPA00143
UniProt:Q9FJ80
Coordinates (TAIR10) chr5:-:21176661..21180143
Molecular Weight (calculated) 33632.60 Da
IEP (calculated) 8.97
GRAVY (calculated) -0.38
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAASSSIVR SEPFAGKLCG LEDVPENCIT AMFMYMEPPE ICLLARVNKS FHRASRSDAV WEDKLPSNYK FLVRRILEDQ QQVGVKDKLI YRKKEIYARL
101: CRPNLFDTGT KEAWLDKRSG KVFLAISPKA MKITGIDDRR YWEHISSDES RFGSITYLRQ IWWLEAVGKI RFEFAPGKYS LLFKIQLGKP IRKCGRKTCS
201: LDQVHGWDIK PVRFQLSTSD GQCAMSERHL DESGRWVYHH AGDFVVENQN SPVWVKFSML QIDCTHTKGG LCLDCVIICP FEYRGKYKYS D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)