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AT5G49840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At5g49840-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At5g49840-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP-dependent Clp protease
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP-dependent Clp protease; FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 32248 Blast hits to 28333 proteins in 3078 species: Archae - 765; Bacteria - 18641; Metazoa - 1800; Fungi - 1278; Plants - 1157; Viruses - 4; Other Eukaryotes - 8603 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G49840-MONOMEReggNOG:COG1219eggNOG:KOG0745EMBL:AB025612EMBL:CP002688EnsemblPlants:AT5G49840EnsemblPlants:AT5G49840.1
entrez:835047Gene3D:3.40.50.300GeneID:835047Genevisible:F4K7F6GO:GO:0005524GO:GO:0005739GO:GO:0006457
GO:GO:0008233Gramene:AT5G49840.1hmmpanther:PTHR11262hmmpanther:PTHR11262:SF9HOGENOM:HOG000010093InParanoid:F4K7F6InterPro:IPR003593
InterPro:IPR003959InterPro:IPR004487InterPro:IPR019489InterPro:IPR027417iPTMnet:F4K7F6KEGG:ath:AT5G49840KO:K03544
ncoils:CoilOMA:SERQHDAPaxDb:F4K7F6Pfam:PF07724Pfam:PF10431PRIDE:F4K7F6ProteinModelPortal:F4K7F6
Proteomes:UP000006548RefSeq:NP_568714.4SMART:SM00382SMART:SM01086SMR:F4K7F6STRING:3702.AT5G49840.1SUPFAM:SSF52540
TAIR:AT5G49840TIGRfam:TIGR00382TIGRFAMs:TIGR00382UniGene:At.49150UniProt:F4K7F6
Coordinates (TAIR10) chr5:+:20255243..20259035
Molecular Weight (calculated) 66393.50 Da
IEP (calculated) 5.00
GRAVY (calculated) -0.36
Length 608 amino acids
Sequence (TAIR10)
(BLAST)
001: MFCSLSISRF VSRKTITSSS LLSRSFRFLL SVDSPPHIPL LRPSSNTLIP SSSFSRRIWD SCSGGGGGGG GDDYDHIRSD VNCPRCSAQM HVIFSNRPLS
101: LTAREPGIYQ AVNFCSQCKT AFYFRPFKLS PLQGSFIELG KVKGTDDDHD DDDDDQKSFP RNWKIQGLRS DEDGEDADEE EDESNGGDKE KQSVIKLPTP
201: KEICQGLDEF VIGQEKAKKV LSVAVYNHYK RIYHASRKKG SASESYNIDM EDDNIDHVEL DKSNVLLLGP TGSGKTLLAK TLARIVNVPF AIADATSLTQ
301: ASYVGEDVES ILYKLYVEAG CNVEEAQRGI VYIDEVDKMT MKSHSSNGGR DVSGEGVQQS LLKLLEGTVV SVPIPEKGLR RDPRGDSIQM DTKDILFICG
401: GAFIDLEKTV SERQHDASIG FGASVRTNMS TSGLSSAAVT SSLLESLQSE DLVAYGLIPE FVGRLPILVS LSALNEDQLV QVLTEPKSAL GKQYKKLFRM
501: NNVQLQFTEG ATRLIARKAM SKNTGARGLR SILESILTEA MFEVPDSITE GSQSIKAVLV DEEAVGSVGS PGCGAKILKG DNVLQQFVEE AESKEKSKED
601: EAKRAQSM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)