AT5G48120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.970 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 594 Blast hits to 356 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 233; Plants - 48; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19508210..19514774 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 124262.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.92 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.24 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1134 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MMVEPNQLVQ HLETFVDTNR SSSQQDDSLK AIASSLENDS LSITQLVREM EMYLTTTDNL VRARGILLLA EILDCLKAKP LNDTIVHTLV GFFSEKLADW 0101: RAMCGALVGC LALLKRKDVA GVVTDIDVQA MAKSMIQNVQ VQALALHERK LAFELLECLL QQHSEAILTM GDLLVYAMCE AIDGEKDPQC LMIVFHLVEL 0201: LAPLFPSPSG PLASDASDLF EVIGCYFPLH FTHTKDDEAN IRREDLSRGL LLAISSTPFF EPYAIPLLLE KLSSSLPVAK VDSLKCLKDC ALKYGVDRMK 0301: KHYGALWSAL KDTFYSSTGT HLSFAIESLT SPGFEMNEIH RDAVSLLQRL VKQDISFLGF VVDDTRINTV FDTIYRYPQY KEMPDPSKLE VLVISQILSV 0401: SAKASVQSCN IIFEAIFFRL MNTLGIVEKT STGDVVQNGN STVSTRLYHG GLHLCIELLA ASKDLILGFE ECSPTSGCAN SGCSMVKSFS VPLIQVFTSA 0501: VCRSNDDSVV DVYLGVKGLL TMGMFRGGSS PVSRTEFENI LVTLTSIITA KSGKTVVWEL ALKALVCIGS FIDRYHESDK AMSYMSIVVD NLVSLACSSH 0601: CGLPYQMILE ATSEVCSTGP KYVEKMVQGL EEAFCSSLSD FYVNGNFESI DNCSQLLKCL TNKLLPRVAE IDGLEQLLVH FAISMWKQIE FCGVFSCDFN 0701: GREFVEAAMT TMRQVVGIAL VDSQNSIIQK AYSVVSSCTL PAMESIPLTF VALEGLQRDL SSRDELILSL FASVIIAASP SASIPDAKSL IHLLLVTLLK 0801: GYIPAAQALG SMVNKLGSGS GGTNTSRDCS LEEACAIIFH ADFASGKKIS SNGSAKIIVG SETTMSKICL GYCGSLDLQT RAITGLAWIG KGLLMRGNER 0901: VNEIALVLVE CLKSNNCSGH ALHPSAMKHA ADAFSIIMSD SEVCLNRKFH AVIRPLYKQR CFSTIVPILE SLIMNSQTSL SRTMLHVALA HVISNVPVTV 1001: ILDNTKKLQP LILEGLSVLS LDSVEKETLF SLLLVLSGTL TDTKGQQSAS DNAHIIIECL IKLTSYPHLM VVRETSIQCL VALLELPHRR IYPFRREVLQ 1101: AIEKSLDDPK RKVREEAIRC RQAWASITSG SNIF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)