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AT5G47760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:20423899 (2010): plastid
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-phosphoglycolate phosphatase 2
Curator
Summary (TAIR10)
serine/threonine protein kinase
Computational
Description (TAIR10)
2-phosphoglycolate phosphatase 2 (PGLP2); FUNCTIONS IN: protein serine/threonine kinase activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357), 2-phosphoglycolate phosphatase, eukaryotic (InterPro:IPR006349); BEST Arabidopsis thaliana protein match is: 2-phosphoglycolate phosphatase 1 (TAIR:AT5G36700.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20075EC:3.1.3.18eggNOG:COG0647eggNOG:KOG2882
EMBL:AB016886EMBL:AK118640EMBL:AY087611EMBL:BT005294
EMBL:CP002688EnsemblPlants:AT5G47760EnsemblPlants:AT5G47760.1entrez:834827
Gene3D:3.40.50.1000Gene3D:3.40.50.10410GeneID:834827Genevisible:Q8GWU0
GO:GO:0004674GO:GO:0006468GO:GO:0008967GO:GO:0009507
Gramene:AT5G47760.1gramene_pathway:3.1.3.18gramene_pathway:PWY-181hmmpanther:PTHR19288
hmmpanther:PTHR19288:SF33HOGENOM:HOG000068104InParanoid:Q8GWU0InterPro:IPR006349
InterPro:IPR006357InterPro:IPR023214InterPro:IPR023215KEGG:ath:AT5G47760
KO:K19269OMA:ESIFPRAPaxDb:Q8GWU0Pfam:PF13242
Pfam:PF13344Pfam:Q8GWU0PIRSF:PIRSF000915PRIDE:Q8GWU0
PRO:PR:Q8GWU0ProteinModelPortal:Q8GWU0Proteomes:UP000006548RefSeq:NP_199587.1
SMR:Q8GWU0STRING:3702.AT5G47760.1SUPFAM:SSF56784TAIR:AT5G47760
tair10-symbols:ATPGLP2tair10-symbols:ATPK5tair10-symbols:PGLP2TIGRfam:TIGR01452
TIGRfam:TIGR01460TIGRFAMs:TIGR01452TIGRFAMs:TIGR01460UniGene:At.29880
UniProt:Q8GWU0
Coordinates (TAIR10) chr5:-:19343121..19344979
Molecular Weight (calculated) 33013.50 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.12
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPQLLSSSN FKSLFDSVDT FLFDCDGVIW KGETLIDGVS QTLDLIRSKG KNVVFVTNNS VKSRRQYAEK FRSLGVTSIT QDEIFSSSFA AAMYLKVNNF
101: PKDKKVYVIG GEGVLEELQI AGFTGLGGPE DGEKKAQWKS NSLFEHDKSV GAVVVGLDPN INYYKLQYGT LCVRENPGCL FIATNRDAVG HMTDLQEWPG
201: AGCMVAAMCG STEREPIVVG KPSTFMMDFL LQKFGTETSR MCMVGDRLDT DILFGQNAGC KTLLVLTGVT SESNLLDKGN KIEPDYYTST VSDIIKLMES
301: P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)