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AT5G47240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.929
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nudix hydrolase homolog 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nudix hydrolase homolog 8 (NUDT8); FUNCTIONS IN: hydrolase activity; INVOLVED IN: response to wounding; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), Nudix hydrolase 6-like (InterPro:IPR003293), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 2 (TAIR:AT5G47650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G47240-MONOMEREC:3.6.1.-eggNOG:ENOG410Z4GHeggNOG:KOG0648EMBL:AB018117EMBL:AY087784EMBL:AY125502
EMBL:BT000563EMBL:CP002688EnsemblPlants:AT5G47240EnsemblPlants:AT5G47240.1entrez:834771Gene3D:3.90.79.10GeneID:834771
Genevisible:Q8L7W2GO:GO:0009611GO:GO:0016787GO:GO:0046872Gramene:AT5G47240.1hmmpanther:PTHR13994hmmpanther:PTHR13994:SF9
HOGENOM:HOG000240943InParanoid:Q8L7W2InterPro:IPR000086InterPro:IPR003293InterPro:IPR015797InterPro:IPR020084KEGG:00230+3.6.1.-
KEGG:00332+3.6.1.-KEGG:00790+3.6.1.-KEGG:ath:AT5G47240OMA:YLMMTYWPaxDb:Q8L7W2Pfam:PF00293Pfam:Q8L7W2
Pfscan:PS51462PhylomeDB:Q8L7W2PRIDE:Q8L7W2PRINTS:PR01356PRO:PR:Q8L7W2PROSITE:PS00893PROSITE:PS51462
ProteinModelPortal:Q8L7W2Proteomes:UP000006548RefSeq:NP_568680.1scanprosite:PS00893SMR:Q8L7W2STRING:3702.AT5G47240.1SUPFAM:SSF55811
TAIR:AT5G47240tair10-symbols:atnudt8tair10-symbols:NUDT8UniGene:At.29907UniProt:Q8L7W2
Coordinates (TAIR10) chr5:+:19183806..19185467
Molecular Weight (calculated) 41316.40 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.23
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSVSLSEVT VIKGTTHLGF MHSFRQPFCG VKISPKFYLS KVDGPKAISS SSNTKSQFVY GGGSIAATSD SGYKMNGVNL KSRTLMSSAV KERSLLDAYD
101: DEYGGVIVDH GKLPSNPYAF ASMLRASLSD WRRKGKKGVW LKLPVEQSEL VPIAIKEGFE YHHAEKGYVM LTYWIPEEEP SMLPANASHQ VGVGGFVLNQ
201: HKEVLVVQEK YCAPSITGLW KLPTGFINES EEIFSGAVRE VKEETGVDTE FSEVIAFRHA HNVAFEKSDL FFICMLRPLS DKIIIDALEI KAAKWMPLAE
301: FVEQPMIRGD KMFKRVIEIC EARLSHRYCG LSPHRLVSTF DGKPSSLYYN VVDDDHDPSH SNCSTEFYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)