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AT5G47020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF5FeggNOG:ENOG410XP5AEMBL:CP002688EnsemblPlants:AT5G47020
EnsemblPlants:AT5G47020.1entrez:834748GeneID:834748GO:GO:0016021
Gramene:AT5G47020.1hmmpanther:PTHR31513hmmpanther:PTHR31513:SF2InParanoid:F4KIY2
InterPro:IPR011641iPTMnet:F4KIY2KEGG:ath:AT5G47020OMA:SNVLVEC
PaxDb:F4KIY2PRIDE:F4KIY2ProteinModelPortal:F4KIY2Proteomes:UP000006548
RefSeq:NP_199513.2SMART:SM01411TAIR:AT5G47020TMHMM:TMhelix
UniGene:At.26763UniProt:F4KIY2
Coordinates (TAIR10) chr5:+:19082005..19089800
Molecular Weight (calculated) 152789.00 Da
IEP (calculated) 7.53
GRAVY (calculated) 0.04
Length 1421 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLGLVFLCVL LVSTPCFSLS QYGVTEFESS VRLFSDEASG NSTSSPISVT CQDLDGVGSL NTTCTLNSNL RFDSDVYVYG TGNLNILAHV LVDCPVEGCM
0101: ITFNVSGTIH LGQSARIVAG SVVFSAINLT MDSNSSIYTT ALAGPPPSQT SGTPYGIDGA GGGHGGRGAS CVKSNKTTYW GGDVYAWSSL HDPWSYGSEG
0201: GVKLSTKNIR GKGGGRVKLI LTDTVHVNGT VSADGGDAGE EGGGGSGGSI CIRAVKLKGY GKISASGGRG WGGGGGGRIS LDCYSIQEDV KVFVHGGASI
0301: GCPKNAGAAG TYFNAELVSL RVGNDNMTTE TETPLLDFPT RPLWSNIYVD NNAKVLVPLL WTRMQVGGQI SLYRGSSIVF GLSKYPISEF ELVAEELLMS
0401: NSVIKVFGAL RLVTKMLLML NSVIQIDGEG NPAVPSSVLE VRNLAVLKGK SVITSNTNLG VYGQGMLTLS GPGDAIKGQR LSLSQFYNIT VGPGSILQAP
0501: LDDYESKNAV TQTLCESKTC PIDLISPPDD CHVNYTLSFS LQICRVEDIL VRGLVKGSII QIHRARTVVV TDDGLITASG FGCSAGLGKG LYSNGAGSGA
0601: GHGGRGGSGI FNGRVCNGGH TYGDPDFPCE LGSGAESPDK SYGNVTGGGM IVIGSIQFPL LTLNLRGSLS SDGQSLWKPT ANGNRSLVGG VGGGSGGTIL
0701: LFLQMLELSK NSSLSVRGGR GGPLGGGGGG GGRLHFHWDM LHTGDEYSPV AIVKGSISNR GGAGDNGGRF GEEGTMTGKK CPKGLYGTFC LECPIGTYKN
0801: VEGSDKRLCT PCPPEHLPSR AKFVYVRGGV SEPVCPYKCV SEKYRLPNCY TPLEELVYTF GGPLPFTLLL SCVVVVLGLL LSTLSIKLLR LSFYGANSIE
0901: HQSAHCLPHL LSLSEVRGAK SEDTQTHAYR MYFMGPNNFR EPWHLPYSPP GAIIEIVYED AFNSFINEIN STAAYDWWEG SVHSILSVLA NPCAWSWKQW
1001: RRRRKIHRLQ EYVKSQYDHS CLRSCRSRAL YKGMKVGATP DLMVAYIDFF LGGDEKRVDM VSIIQKRFPM CILFGGDGSY MSPYSLHSDT LLTNLLGQHI
1101: PPSVWHRFVA GLNAQLRTVR HGSIRSALLP VIRWINSHGN PQLEFHGVRI ELGWFQATAS GYYQLGILVF VGDFPLNTVN RSLSFSRSDD ESPGNNSACP
1201: SKSLIELQQN LIQPGHGLSR KRINGGINGG LINEISLESL EYRRDLLFPF SLLLNNTRPV GRQDTLLRFI SILLLADLSV TLLALLQFYW LALAAFLAIL
1301: LILPLSLLCP FPAGLNALLS KEMRRASLTR IYGLWNATSL TNVIVAFICG VIHSGFFTDE LPNIWNAIRD DDKWWVLPTF LLLLKSIQAR FLDWHVANLE
1401: VPDFSLLCPD PDTFWAYESG A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)