suba logo
AT5G41670.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 0.624
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21841088 (2011): mitochondrion
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 6-phosphogluconate dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding domain (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT1G64190.1); Has 12747 Blast hits to 12577 proteins in 2621 species: Archae - 86; Bacteria - 8556; Metazoa - 692; Fungi - 242; Plants - 329; Viruses - 4; Other Eukaryotes - 2838 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G41670-MONOMERBioCyc:ARA:GQT-689-MONOMERBioGrid:19420EC:1.1.1.44eggNOG:COG0362eggNOG:KOG2653EMBL:AB005233
EMBL:AY084486EMBL:AY125503EMBL:BT002261EMBL:CP002688EnsemblPlants:AT5G41670EnsemblPlants:AT5G41670.1EnsemblPlants:AT5G41670.2
entrez:834169Gene3D:1.10.1040.10Gene3D:1.20.5.320Gene3D:3.40.50.720GeneID:834169Genevisible:Q9FFR3GO:GO:0004616
GO:GO:0005739GO:GO:0005829GO:GO:0006098GO:GO:0009506GO:GO:0009507GO:GO:0009570GO:GO:0009744
GO:GO:0009749GO:GO:0009750GO:GO:0019521GO:GO:0046686Gramene:AT5G41670.1Gramene:AT5G41670.2gramene_pathway:1.1.1.44
gramene_pathway:OXIDATIVEPENT-PWYhmmpanther:PTHR11811hmmpanther:PTHR11811:SF33HOGENOM:HOG000255147InParanoid:Q9FFR3IntAct:Q9FFR3InterPro:IPR006113
InterPro:IPR006114InterPro:IPR006115InterPro:IPR006183InterPro:IPR008927InterPro:IPR012284InterPro:IPR013328InterPro:IPR016040
iPTMnet:Q9FFR3KEGG:00030+1.1.1.44KEGG:00480+1.1.1.44KEGG:ath:AT5G41670KO:K00033OMA:EKGWDLNPaxDb:Q9FFR3
Pfam:PF00393Pfam:PF03446Pfam:Q9FFR3PhylomeDB:Q9FFR3PIRSF:PIRSF000109PRIDE:Q9FFR3PRINTS:PR00076
PRO:PR:Q9FFR3ProMEX:Q9FFR3ProteinModelPortal:Q9FFR3Proteomes:UP000006548Reactome:R-ATH-71336RefSeq:NP_198982.1RefSeq:NP_851113.1
SMART:SM01350SMR:Q9FFR3STRING:3702.AT5G41670.1SUPFAM:SSF48179SUPFAM:SSF51735SwissPalm:Q9FFR3TAIR:AT5G41670
TIGRfam:TIGR00873TIGRFAMs:TIGR00873UniGene:At.23390UniPathway:UPA00115UniProt:Q9FFR3
Coordinates (TAIR10) chr5:-:16665647..16667110
Molecular Weight (calculated) 53320.60 Da
IEP (calculated) 5.46
GRAVY (calculated) -0.28
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MESVALSRIG LAGLAVMGQN LALNIADKGF PISVYNRTTS KVDETLDRAS NEGKLPVAGQ YSPRDFVLSI QRPRSVIILV KAGAPVDQTI SALSEYMEPG
101: DCIIDGGNEW YQNTERRIVE AEKKGLLYLG MGVSGGEEGA RNGPSLMPGG SFTAYNNVKD ILEKVAAQVE DGPCVTYIGE GGSGNFVKMV HNGIEYGDMQ
201: LISEAYDVLK NVGGLSNDEL AEIFTEWNRG ELESFLVEIT SDIFRVKDDY GDGELVDKIL DKTGMKGTGK WTVQQAAELS VAAPTIAASL DCRYLSGLKD
301: ERENAAKVLE EAGLKEDIGS ASRGVDKKRL IDDVRQALYA SKICSYAQGM NLLRAKSLEK GWDLNLGEMA RIWKGGCIIR AVFLDRIKKA YQRNPNLASL
401: VVDPDFAKEM VQRQAAWRRV VGLAISAGIS TPGMCASLAY FDTYRRARLP ANLVQAQRDL FGAHTYERTD RPGAYHTEWT KLARKSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)