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AT5G40850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : urophorphyrin methylase 1
Curator
Summary (TAIR10)
Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.
Computational
Description (TAIR10)
urophorphyrin methylase 1 (UPM1); CONTAINS InterPro DOMAIN/s: Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Uroporphyrin-III C-methyltransferase, plant (InterPro:IPR012383), Uroporphyrin-III C-methyltransferase, C-terminal (InterPro:IPR006366), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776), Uroporphiryn-III C-methyltransferase, conserved site (InterPro:IPR003043); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G40850-MONOMERBioCyc:ARA:GQT-1603-MONOMEREC:2.1.1.107eggNOG:COG0007
eggNOG:KOG1527EMBL:AB011477EMBL:AF462833EMBL:AY058093
EMBL:AY079029EMBL:AY142030EMBL:CP002688EMBL:L47479
EnsemblPlants:AT5G40850EnsemblPlants:AT5G40850.1entrez:834085ExpressionAtlas:Q42606
Gene3D:3.30.950.10Gene3D:3.40.1010.10GeneID:834085GO:GO:0004851
GO:GO:0009507GO:GO:0019354GO:GO:0043115Gramene:AT5G40850.1
gramene_pathway:2.1.1.107gramene_pathway:PWY-5194hmmpanther:PTHR21091hmmpanther:PTHR21091:SF16
HOGENOM:HOG000290519InterPro:IPR000878InterPro:IPR003043InterPro:IPR006366
InterPro:IPR012383InterPro:IPR014776InterPro:IPR014777KEGG:00860+4.99.1.4+1.3.1.76+2.1.1.107
OMA:SAHAIICPfam:PF00590PhylomeDB:Q42606PIRSF:PIRSF036478
PROSITE:PS00839PROSITE:PS00840Proteomes:UP000006548RefSeq:NP_198901.1
scanprosite:PS00839scanprosite:PS00840SMR:Q42606STRING:3702.AT5G40850.1
SUPFAM:SSF53790TAIR:AT5G40850tair10-symbols:UPM1TIGRfam:TIGR01469
TIGRFAMs:TIGR01469UniGene:At.20285unipathway:UPA00148unipathway:UPA00262
UniProt:Q42606
Coordinates (TAIR10) chr5:+:16367205..16368724
Molecular Weight (calculated) 39932.00 Da
IEP (calculated) 6.11
GRAVY (calculated) -0.09
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MALVQRIPIS SSSIRNWQQA RTNLTPICCL HYNTASSSSS PFTEKHSVER YQRDQWLYKA VEPTPPSTPS PSPFEDEVFV RENDIASQLP ELKKLLAVLK
101: EKRVKGCKGG DCGPGDVYLV GTGPGDPELL TLKAVRVIQS ADLLLYDRLV SNDVLELVAP DARLLYVGKT AGYHSRTQEE IHELLLNFAE AGATVVRLKG
201: GDPLVFGRGG EEMDFLQQQG IRVQVIPGIT AASGIAAELG IPLTHRGVAT SVRFLTGHSR KGGTDPLFVA ENAADPDTTL VVYMGLGTLP SLAQKLMDHG
301: LPSDTPAVAV ERGTTPLQRT VFAELKDFAT EIQSAGLVSP TLIIIGKVVE LSPLWPHCTK ESSCLVETR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)