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AT5G38410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15593128 (2005): extracellular region
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Ribulose bisphosphate carboxylase (small chain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 8 components; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1595-MONOMERBioCyc:ARA:GQT-1596-MONOMERBioCyc:MetaCyc:AT5G38410-MONOMERBioGrid:19079EC:4.1.1.39eggNOG:COG4451eggNOG:ENOG410IM2H
EMBL:AB005248EMBL:AF360124EMBL:AF410314EMBL:AF462822EMBL:AY051025EMBL:AY054552EMBL:AY064686
EMBL:AY098970EMBL:BT000721EMBL:CP002688EMBL:X14564EnsemblPlants:AT5G38410EnsemblPlants:AT5G38410.1entrez:833828
ExpressionAtlas:P10798Gene3D:3.30.190.10GeneID:833828Genevisible:P10798GO:GO:0004497GO:GO:0009507GO:GO:0009853
GO:GO:0016984GO:GO:0019253gramene_plant_reactome:1119519gramene_plant_reactome:6877215hmmpanther:PTHR31262hmmpanther:PTHR31262:SF4HOGENOM:HOG000141332
InParanoid:P10798IntAct:P10798InterPro:IPR000894InterPro:IPR024680InterPro:IPR024681iPTMnet:P10798KEGG:00630+4.1.1.39
KEGG:00710+4.1.1.39PaxDb:P10798Pfam:P10798Pfam:PF00101Pfam:PF12338PhylomeDB:P10798PIR:S03719
PRIDE:P10798PRINTS:PR00152PRO:PR:P10798ProteinModelPortal:P10798Proteomes:UP000006548RefSeq:NP_198657.1SMART:SM00961
SMR:P10798STRING:3702.AT5G38410.3SUPFAM:SSF55239SWISS-2DPAGE:P99057TAIR:AT5G38410UniGene:At.20381UniGene:At.24772
UniGene:At.46639UniGene:At.49098UniGene:At.49366UniGene:At.70032UniGene:At.70053UniGene:At.71313UniGene:At.74604
UniGene:At.75410UniGene:At.75674UniProt:P10798
Coordinates (TAIR10) chr5:-:15377501..15378306
Molecular Weight (calculated) 20285.40 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.18
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)