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AT5G34940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glucuronidase 3
Curator
Summary (TAIR10)
The protein is predicted (WoLF PSORT program) to be membrane-associated.
Computational
Description (TAIR10)
glucuronidase 3 (GUS3); FUNCTIONS IN: beta-glucuronidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 79, N-terminal (InterPro:IPR005199); BEST Arabidopsis thaliana protein match is: glucuronidase 1 (TAIR:AT5G61250.1); Has 353 Blast hits to 349 proteins in 64 species: Archae - 0; Bacteria - 24; Metazoa - 175; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHNVeggNOG:ENOG410YDJWEMBL:CP002688EnsemblPlants:AT5G34940EnsemblPlants:AT5G34940.1entrez:833437ExpressionAtlas:F4JWV5
GeneID:833437GO:GO:0016020GO:GO:0016798Gramene:AT5G34940.1hmmpanther:PTHR14363hmmpanther:PTHR14363:SF16InterPro:IPR005199
InterPro:IPR017853PANTHER:PTHR14363PaxDb:F4JWV5Pfam:PF03662PRIDE:F4JWV5ProteinModelPortal:F4JWV5Proteomes:UP000006548
RefSeq:NP_851092.1STRING:3702.AT5G34940.2SUPFAM:SSF51445TAIR:AT5G34940tair10-symbols:AtGUS3tair10-symbols:GUS3UniGene:At.30627
UniProt:F4JWV5
Coordinates (TAIR10) chr5:-:13235912..13237799
Molecular Weight (calculated) 44738.30 Da
IEP (calculated) 9.47
GRAVY (calculated) -0.27
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRWDELNAF FRKTGTKVIF GLNALSGRSI KSNGEAIGAW NYTNAESFIR FTAENNYTID GWELGNELCG SGVGARVGAN QYAIDTINLR NIVNRVYKNV
101: SPMPLVIGPG GFFEVDWFTE YLNKAENSLN ATTRHIYDLG PGVDEHLIEK ILNPSYLDQE AKSFRSLKNI IKNSSTKAVA WVGESGGAYN SGRNLVSNAF
201: VYSFWYLDQL GMASLYDTKT YCRQSLIGGN YGLLNTTNFT PNPDYYSALI WRQLMGRKAL FTTFSGTKKI RSYTHCARQS KGITVLLMNL DNTTTVVAKV
301: ELNNSFSLRH TKHMKSYKRA SSQLFGGPNG VIQREEYHLT AKDGNLHSQT MLLNGNALQV NSMGDLPPIE PIHINSTEPI TIAPYSIVFV HMRNVVVPAC
401: A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)