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AT5G27290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INI3eggNOG:ENOG410YFKFEMBL:BT028971EMBL:CP002688
EnsemblPlants:AT5G27290EnsemblPlants:AT5G27290.1entrez:832787ExpressionAtlas:Q08AA8
GeneID:832787GO:GO:0009507Gramene:AT5G27290.1HOGENOM:HOG000265031
OMA:DSQVRWSPhylomeDB:Q08AA8Proteomes:UP000006548RefSeq:NP_568492.1
STRING:3702.AT5G27290.1SUPFAM:SSF140990TAIR:AT5G27290UniGene:At.49069
UniGene:At.69944UniProt:Q08AA8
Coordinates (TAIR10) chr5:-:9618590..9620473
Molecular Weight (calculated) 37378.00 Da
IEP (calculated) 6.86
GRAVY (calculated) 0.09
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMLLHSVGL IPCSNQQKSF LFHSYYRYRC IVCSSETGLS IRRQALEQVD SKLSSGDERA ALSLVKDLQG KPDGLRCFGA ARQVPQRLYT LEELKLNGIN
101: AASLLSPTDT TLGSIERNLQ IAAVSGGIVA WKAFDLSSQQ LFFLTLGFMF LWTLDLVSFN GGIGSLVLDT TGHTFSQRYH NRVVQHEAGH FLVAYLVGIL
201: PRGYTLSSLE ALQKEGSLNI QAGSAFVDYE FLEEVNSGKV SATMLNRFSC IALAGVATEY LLYGYAEGGL DDISKLDGLV KSLGFTQKKA DSQVRWSVLN
301: TILLLRRHEI ARSKLAQAMS KGESVGSCIQ IIEDSIDPSD I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)