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AT5G26830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.500
plastid 0.500
ASURE: mitochondrion,plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21311031 (2011): mitochondrion
  • PMID:21166475 (2011): cytosol
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Threonyl-tRNA synthetase
Curator
Summary (TAIR10)
Encodes a dual-targeted threonyl-tRNA synthetase found in both the chloroplast and mitochondrion.
Computational
Description (TAIR10)
Threonyl-tRNA synthetase; FUNCTIONS IN: ligase activity, forming aminoacyl-tRNA and related compounds, threonine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, cell wall, chloroplast, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Threonyl-tRNA synthetase, class IIa (InterPro:IPR002320), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158); BEST Arabidopsis thaliana protein match is: threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (TAIR:AT2G04842.1); Has 19313 Blast hits to 19116 proteins in 2937 species: Archae - 413; Bacteria - 11477; Metazoa - 486; Fungi - 321; Plants - 109; Viruses - 0; Other Eukaryotes - 6507 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G26830-MONOMERBioGrid:18016EC:6.1.1.3eggNOG:COG0441
eggNOG:KOG1637EMBL:AF007270EMBL:AY048205EMBL:BT005825
EMBL:CP002688EMBL:Y14329EnsemblPlants:AT5G26830EnsemblPlants:AT5G26830.1
entrez:832741Gene3D:3.10.20.30Gene3D:3.40.50.800GeneID:832741
Genevisible:O04630GO:GO:0004829GO:GO:0005524GO:GO:0005618
GO:GO:0005739GO:GO:0005829GO:GO:0005886GO:GO:0006435
GO:GO:0009507GO:GO:0016020GO:GO:0046872gramene_pathway:6.1.1.3
gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00184hmmpanther:PTHR11451hmmpanther:PTHR11451:SF5
HOGENOM:HOG000003878InParanoid:O04630IntAct:O04630InterPro:IPR002314
InterPro:IPR002320InterPro:IPR004095InterPro:IPR004154InterPro:IPR006195
InterPro:IPR012675InterPro:IPR012676InterPro:IPR012947InterPro:IPR018163
KEGG:ath:AT5G26830KO:K01868OMA:FKLEYMSPaxDb:O04630
Pfam:O04630Pfam:PF00587Pfam:PF02824Pfam:PF03129
Pfam:PF07973Pfscan:PS50862PhylomeDB:O04630PIR:T01763
PIR:T51624PRIDE:O04630PRINTS:PR01047PRO:PR:O04630
PROSITE:PS50862ProteinModelPortal:O04630Proteomes:UP000006548RefSeq:NP_198035.2
SMART:SM00863SMR:O04630STRING:3702.AT5G26830.1SUPFAM:SSF52954
SUPFAM:SSF55186SUPFAM:SSF55681SUPFAM:SSF81271TAIR:AT5G26830
TIGRfam:TIGR00418TIGRFAMs:TIGR00418UniGene:At.23575UniGene:At.55026
UniProt:O04630
Coordinates (TAIR10) chr5:+:9437351..9441568
Molecular Weight (calculated) 80940.70 Da
IEP (calculated) 6.97
GRAVY (calculated) -0.41
Length 709 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)