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AT5G24690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:22923678 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
  • PMID:16618929 (2006): unclear
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3411)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: reticulata-related 1 (TAIR:AT5G22790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH4WeggNOG:ENOG410XQI0EMBL:AF370204EMBL:AK229775EMBL:AK229818EMBL:AK229879EMBL:AK229887
EMBL:AK229942EMBL:AK229959EMBL:AK230063EMBL:AK230067EMBL:AK230098EMBL:AK230099EMBL:AK230309
EMBL:AK230320EMBL:AK230414EMBL:AY056434EMBL:AY133867EMBL:CP002688EnsemblPlants:AT5G24690EnsemblPlants:AT5G24690.1
entrez:832541GeneID:832541GO:GO:0005739GO:GO:0009507GO:GO:0009536GO:GO:0009706GO:GO:0009941
Gramene:AT5G24690.1hmmpanther:PTHR31038hmmpanther:PTHR31038:SF2InterPro:IPR021825KEGG:ath:AT5G24690OMA:YLSIFARPfam:PF11891
PhylomeDB:Q93W02Proteomes:UP000006548RefSeq:NP_197857.2STRING:3702.AT5G24690.1TAIR:AT5G24690UniGene:At.49058UniGene:At.71083
UniGene:At.75041UniProt:Q93W02
Coordinates (TAIR10) chr5:-:8455783..8458513
Molecular Weight (calculated) 56815.50 Da
IEP (calculated) 9.41
GRAVY (calculated) -0.13
Length 521 amino acids
Sequence (TAIR10)
(BLAST)
001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)