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AT5G24300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycogen/starch synthases, ADP-glucose type
Curator
Summary (TAIR10)
SSI is a plastidial enzyme and crucial for the synthesis of normal amylopectin in the leaves of Arabidopsis. The absence of SSI results in a deficiency in the number of shorter glucans which in turn affect the formation and connection of the amylopectin clusters in starch.
Computational
Description (TAIR10)
SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1 (SSI1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, starch synthase activity; INVOLVED IN: amylopectin biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 2 (TAIR:AT3G01180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:2.4.1.-eggNOG:COG0297eggNOG:ENOG410IHZQEMBL:AB006701EMBL:AF121673EMBL:KJ138668EnsemblPlants:AT5G24300
EnsemblPlants:AT5G24300.1EnsemblPlants:AT5G24300.2entrez:832497ExpressionAtlas:W8QN76GeneID:832497GO:GO:0004373GO:GO:0009501
GO:GO:0009507GO:GO:0019252Gramene:AT5G24300.1Gramene:AT5G24300.2gramene_plant_reactome:1119477gramene_plant_reactome:6875766HAMAP:MF_00484
hmmpanther:PTHR12526hmmpanther:PTHR12526:SF17InterPro:IPR001296InterPro:IPR011835InterPro:IPR013534KEGG:00500+2.4.1.21KEGG:ath:AT5G24300
KO:K00703OMA:SGKVQCKPaxDb:W8QN76Pfam:PF00534Pfam:PF08323Pfam:Q9FNF2PhylomeDB:W8QN76
ProteinModelPortal:W8QN76RefSeq:NP_001190378.1RefSeq:NP_197818.1SMR:W8QN76STRING:3702.AT5G24300.1SUPFAM:SSF53756tair10-symbols:ATSS1
tair10-symbols:SSItair10-symbols:SSI1TIGRfam:TIGR02095TIGRFAMs:TIGR02095UniGene:At.22528UniPathway:UPA00152unipathway:UPA00164
UniProt:Q9FNF2UniProt:W8QN76
Coordinates (TAIR10) chr5:+:8266934..8270860
Molecular Weight (calculated) 72102.50 Da
IEP (calculated) 6.41
GRAVY (calculated) -0.23
Length 652 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLQISGSV KFEPFVGFNR IRHFRPIASL GFPRFRRRFS IGRSLLLRRS SSFSGDSRES DEERFITDAE RDGSGSVLGF QLTPPGDQQT VSTSTGEITH
101: HEEKKEAIDQ IVMADFGVPG NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV ISPRYLNGTA ADKNYARAKD
201: LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA
301: KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL
401: SSRKSVINGI TNGINVDEWN PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG PDLMVDDIQF VMLGSGDPKY
501: ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS
601: ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)