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AT5G23760.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.945
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Copper transport protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Copper transport protein family; BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G01490.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JP8BeggNOG:ENOG4111DYMEMBL:BT024557EMBL:CP002688EnsemblPlants:AT5G23760EnsemblPlants:AT5G23760.1entrez:832441
GeneID:832441GO:GO:0030001GO:GO:0046872Gramene:AT5G23760.1hmmpanther:PTHR22814hmmpanther:PTHR22814:SF52HOGENOM:HOG000237719
InterPro:IPR006121KEGG:ath:AT5G23760ncoils:CoilOMA:MKVLTMSPhylomeDB:Q2HIM4Proteomes:UP000006548RefSeq:NP_568436.1
SMR:Q2HIM4SUPFAM:SSF55008TAIR:AT5G23760UniGene:At.8741UniProt:Q2HIM4
Coordinates (TAIR10) chr5:-:8013242..8014129
Molecular Weight (calculated) 11569.20 Da
IEP (calculated) 9.45
GRAVY (calculated) -0.86
Length 103 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQKVVLKVL TMTDDKTKQK AIEAAADIFG VDSIAADMKD QKLTVIGLMD AVAVVKKLKK VGKVDLISVG PAKEEKKEEK KEEKKEEKKE EKKEEQKEEE
101: PKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)