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AT5G22800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Alanyl-tRNA synthetase, class IIc
Curator
Summary (TAIR10)
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 1030 (EMB1030); FUNCTIONS IN: alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, ATP binding, nucleic acid binding; INVOLVED IN: alanyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Alanyl-tRNA synthetase, class IIc (InterPro:IPR002318), Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain (InterPro:IPR018162), Alanyl-tRNA synthetase, class IIc, core domain (InterPro:IPR018165), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Alanyl-tRNA synthetase, class IIc, N-terminal (InterPro:IPR018164), Phosphoesterase, DHHA1 (InterPro:IPR003156); BEST Arabidopsis thaliana protein match is: Alanyl-tRNA synthetase (TAIR:AT1G50200.1); Has 15847 Blast hits to 15731 proteins in 3137 species: Archae - 486; Bacteria - 7745; Metazoa - 750; Fungi - 242; Plants - 138; Viruses - 0; Other Eukaryotes - 6486 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G22800-MONOMEREC:6.1.1.7eggNOG:COG0013eggNOG:KOG0188EMBL:AB005243EMBL:CP002688EnsemblPlants:AT5G22800
EnsemblPlants:AT5G22800.1entrez:832343GeneID:832343GO:GO:0000049GO:GO:0004813GO:GO:0005524GO:GO:0005739
GO:GO:0006400GO:GO:0006419GO:GO:0008270GO:GO:0009507GO:GO:0009570GO:GO:0009793GO:GO:0016020
GO:GO:0016597Gramene:AT5G22800.1gramene_pathway:2.5.1.55gramene_pathway:PWY-1269gramene_pathway:PWY-5111HAMAP:MF_00036_BHAMAP:MF_03134
hmmpanther:PTHR11777hmmpanther:PTHR11777:SF14HOGENOM:HOG000156965InParanoid:Q9FFC7InterPro:IPR002318InterPro:IPR003156InterPro:IPR009000
InterPro:IPR012947InterPro:IPR018162InterPro:IPR018163InterPro:IPR018164InterPro:IPR018165InterPro:IPR023033InterPro:IPR027522
KEGG:00970+6.1.1.7KEGG:ath:AT5G22800KO:K01872ncoils:CoilOMA:EAIKWAWPaxDb:Q9FFC7Pfam:PF01411
Pfam:PF02272Pfam:PF07973Pfam:Q9FFC7Pfscan:PS50860PhylomeDB:Q9FFC7PRIDE:Q9FFC7PRINTS:PR00980
PRO:PR:Q9FFC7PROSITE:PS50860ProteinModelPortal:Q9FFC7Proteomes:UP000006548RefSeq:NP_680210.2SMART:SM00863SMR:Q9FFC7
STRING:3702.AT5G22800.1SUPFAM:0049182SUPFAM:SSF101353SUPFAM:SSF50447SUPFAM:SSF55186SUPFAM:SSF55681TAIR:AT5G22800
tair10-symbols:EMB1030tair10-symbols:EMB263tair10-symbols:EMB86TIGRfam:TIGR00344TIGRFAMs:TIGR00344UniGene:At.24930UniProt:Q9FFC7
Coordinates (TAIR10) chr5:-:7616221..7619961
Molecular Weight (calculated) 107836.00 Da
IEP (calculated) 5.26
GRAVY (calculated) -0.25
Length 978 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFSRVNLFD FPLRPILLSH PSSIFVSTRF VTRTSAGVSP SILLPRSTQS PQIIAKSSSV SVQPVSEDAK EDYQSKDVSG DSIRRRFLEF FASRGHKVLP
101: SSSLVPEDPT VLLTIAGMLQ FKPIFLGKVP REVPCATTAQ RCIRTNDLEN VGKTARHHTF FEMLGNFSFG DYFKKEAIKW AWELSTIEFG LPANRVWVSI
201: YEDDDEAFEI WKNEVGVSVE RIKRMGEADN FWTSGPTGPC GPCSELYYDF YPERGYDEDV DLGDDTRFIE FYNLVFMQYN KTEDGLLEPL KQKNIDTGLG
301: LERIAQILQK VPNNYETDLI YPIIAKISEL ANISYDSAND KAKTSLKVIA DHMRAVVYLI SDGVSPSNIG RGYVVRRLIR RAVRKGKSLG INGDMNGNLK
401: GAFLPAVAEK VIELSTYIDS DVKLKASRII EEIRQEELHF KKTLERGEKL LDQKLNDALS IADKTKDTPY LDGKDAFLLY DTFGFPVEIT AEVAEERGVS
501: IDMNGFEVEM ENQRRQSQAA HNVVKLTVED DADMTKNIAD TEFLGYDSLS ARAVVKSLLV NGKPVIRVSE GSEVEVLLDR TPFYAESGGQ IADHGFLYVS
601: SDGNQEKAVV EVSDVQKSLK IFVHKGTVKS GALEVGKEVE AAVDADLRQR AKVHHTATHL LQSALKKVVG QETSQAGSLV AFDRLRFDFN FNRSLHDNEL
701: EEIECLINRW IGDATRLETK VLPLADAKRA GAIAMFGEKY DENEVRVVEV PGVSMELCGG THVGNTAEIR AFKIISEQGI ASGIRRIEAV AGEAFIEYIN
801: SRDSQMTRLC STLKVKAEDV TNRVENLLEE LRAARKEASD LRSKAAVYKA SVISNKAFTV GTSQTIRVLV ESMDDTDADS LKSAAEHLIS TLEDPVAVVL
901: GSSPEKDKVS LVAAFSPGVV SLGVQAGKFI GPIAKLCGGG GGGKPNFAQA GGRKPENLPS ALEKAREDLV ATLSEKLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)