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AT5G20720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : chaperonin 20
Curator
Summary (TAIR10)
Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES.
Computational
Description (TAIR10)
chaperonin 20 (CPN20); FUNCTIONS IN: calmodulin binding, copper ion binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin 21, chloroplast (InterPro:IPR017416), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: chaperonin 10 (TAIR:AT1G14980.1); Has 18503 Blast hits to 9472 proteins in 2912 species: Archae - 42; Bacteria - 12669; Metazoa - 631; Fungi - 230; Plants - 426; Viruses - 4; Other Eukaryotes - 4501 (source: NCBI BLink).
Protein Annotations
BioGrid:17470eggNOG:COG0234eggNOG:KOG1641EMBL:AB007130EMBL:AF059037EMBL:AF268068EMBL:AF296832
EMBL:AF428339EMBL:AF428366EMBL:AJ010818EMBL:AY034979EMBL:AY062971EMBL:CP002688EnsemblPlants:AT5G20720
EnsemblPlants:AT5G20720.1EnsemblPlants:AT5G20720.2EnsemblPlants:AT5G20720.3entrez:832195Gene3D:2.30.33.40GeneID:832195Genevisible:O65282
GO:GO:0005507GO:GO:0005524GO:GO:0005739GO:GO:0006457GO:GO:0009409GO:GO:0009507GO:GO:0009535
GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009941GO:GO:0046686GO:GO:0048046GO:GO:1901671
Gramene:AT5G20720.1Gramene:AT5G20720.2Gramene:AT5G20720.3HAMAP:MF_00580hmmpanther:PTHR10772hmmpanther:PTHR10772:SF0HOGENOM:HOG000133897
InParanoid:O65282IntAct:O65282InterPro:IPR011032InterPro:IPR017416InterPro:IPR018369InterPro:IPR020818iPTMnet:O65282
KEGG:ath:AT5G20720KO:K04078OMA:GEGHSIGPANTHER:PTHR10772PaxDb:O65282Pfam:O65282Pfam:PF00166
PhylomeDB:O65282PIR:T52122PIR:T52613PIRSF:PIRSF038157PRIDE:O65282PRINTS:PR00297PRO:PR:O65282
PROSITE:PS00681ProteinModelPortal:O65282Proteomes:UP000006548RefSeq:NP_001190350.1RefSeq:NP_197572.1RefSeq:NP_851045.1scanprosite:PS00681
SMART:SM00883SMR:O65282STRING:3702.AT5G20720.1SUPFAM:SSF50129SWISS-2DPAGE:O65282TAIR:AT5G20720tair10-symbols:ATCPN21
tair10-symbols:CHCPN10tair10-symbols:CPN10tair10-symbols:CPN20tair10-symbols:CPN21UniGene:At.49045UniGene:At.59645UniProt:O65282
Coordinates (TAIR10) chr5:+:7015015..7016354
Molecular Weight (calculated) 26803.40 Da
IEP (calculated) 9.45
GRAVY (calculated) -0.08
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATQLTASP VTMSARSLAS LDGLRASSVK FSSLKPGTLR QSQFRRLVVK AASVVAPKYT SIKPLGDRVL VKIKEAEEKT LGGILLPSTA QSKPQGGEVV
101: AVGEGRTIGK NKIDITVPTG AQIIYSKYAG TEVEFNDVKH LILKEDDIVG ILETEDIKDL KPLNDRVFIK VAEAEEKTAG GLLLTETTKE KPSIGTVIAV
201: GPGSLDEEGK ITPLPVSTGS TVLYSKYAGN DFKGKDGSNY IALRASDVMA ILS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)