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AT5G19370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:23444301 (2013): mitochondrion
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: co-factor for nitrate, reductase and xanthine dehydrogenase 5 (TAIR:AT5G55130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G19370-MONOMEReggNOG:COG0607eggNOG:COG0760eggNOG:KOG2017EMBL:AF296837EMBL:AF370165EMBL:AY059127
EMBL:AY086512EMBL:CP002688EMBL:Z86095EnsemblPlants:AT5G19370EnsemblPlants:AT5G19370.1entrez:832057Gene3D:3.40.250.10
GeneID:832057Genevisible:Q93WI0GO:GO:0009507GO:GO:0009735GO:GO:0016853Gramene:AT5G19370.1hmmpanther:PTHR10657
HOGENOM:HOG000242526InParanoid:Q93WI0InterPro:IPR000297InterPro:IPR001763KEGG:ath:AT5G19370OMA:WAPDITSPaxDb:Q93WI0
Pfam:PF00581Pfam:PF13616Pfam:Q93WI0Pfscan:PS50198Pfscan:PS50206PhylomeDB:Q93WI0PIR:T52622
PRIDE:Q93WI0PRO:PR:Q93WI0PROSITE:PS50198PROSITE:PS50206ProteinModelPortal:Q93WI0Proteomes:UP000006548RefSeq:NP_568372.1
SMART:SM00450SMR:Q93WI0STRING:3702.AT5G19370.1SUPFAM:SSF52821SUPFAM:SSF54534TAIR:AT5G19370UniGene:At.22465
UniProt:Q93WI0
Coordinates (TAIR10) chr5:-:6524247..6526629
Molecular Weight (calculated) 32981.80 Da
IEP (calculated) 8.62
GRAVY (calculated) -0.08
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MFRVTGTLSA ASSPAVAAAS FSAALRLSIT PTLAIASPPH LRWFSKFSRQ FLGGRISSLR PRIPSPCPIR LSGFPALKMR ASFSSGSSGS SASREILVQH
101: LLVKNNDVEL FAELQKKFLD GEEMSDLAAE YSICPSKKDG GILGWVKLGQ MVPEFEEAAF KAELNQVVRC RTQFGLHLLQ VLSEREPVKD IQVEELHSKM
201: QDPVFMDEAQ LIDVREPNEI EIASLPGFKV FPLRQFGTWA PDITSKLNPE KDTFVLCKVG GRSMQVANWL QSQGFKSVYN ITGGIQAYSL KVDPSIPTY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)