AT5G17880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.658 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : disease resistance protein (TIR-NBS-LRR class) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development. csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal). csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
constitutive shade-avoidance1 (CSA1); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: response to light stimulus, defense response to bacterium, response to red light, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G51570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5908874..5913096 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 135867.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.95 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1197 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTSSSSWVKT DGETPQDQVF INFRGVELRK NFVSHLEKGL KRKGINAFID TDEEMGQELS VLLERIEGSR IALAIFSPRY TESKWCLKEL AKMKERTEQK 0101: ELVVIPIFYK VQPVTVKELK GDFGDKFREL VKSTDKKTKK EWKEALQYVP FLTGIVLDEK SDEDEVINII IRKVKEILNR RSEGPPSKCS ALPPQRHQKR 0201: HETFWGIELR IKQLEEKLRF GSDETTRTIG VVGMPGIGKT TLATMLYEKW NDRFLRHVLI RDIHEASEED GLNYLATKFL QGLLKVENAN IESVQAAHEA 0301: YKDQLLETKV LVILDNVSNK DQVDALLGER NWIKKGSKIL ITTSDKSLMI QSLVNDTYEV PPLSDKDAIK HFIRYAFDGN EGAAPGPGQG NFPKLSKDFV 0401: HYTKGNPLAL QMLGKELLGK DESHWGLKLN ALDQHHNSPP GQSICKMLQR VWEGSYKALS QKEKDALLDI ACFRSQDENY VASLLDSDGP SNILEDLVNK 0501: FMINIYAGKV DMHDTLYMLS KELGREATAT DRKGRHRLWH HHTIIAVLDK NKGGSNIRSI FLDLSDITRK WCFYRHAFAM MRDLRYLKIY STHCPQECES 0601: DIKLNFPEGL LLPLNEVRYL HWLKFPLKEV PQDFNPGNLV DLKLPYSEIE RVWEDNKDAP KLKWVNLNHS KKLNTLAGLG KAQNLQELNL EGCTALKEMH 0701: VDMENMKFLV FLNLRGCTSL KSLPEIQLIS LKTLILSGCS KFKTFQVISD KLEALYLDGT AIKELPCDIG RLQRLVMLNM KGCKKLKRLP DSLGQLKALE 0801: ELILSGCSKL NEFPETWGNM SRLEILLLDE TAIKDMPKIL SVRRLCLNKN EKISRLPDLL NKFSQLQWLH LKYCKNLTHV PQLPPNLQYL NVHGCSSLKT 0901: VAKPLVCSIP MKHVNSSFIF TNCNELEQAA KEEIVVYAER KCHLLASALK RCDESCVPEI LFCTSFPGCE MPSWFSHDAI GSMVEFELPP HWNHNRLSGI 1001: ALCVVVSFKN CKSHANLIVK FSCEQNNGEG SSSSITWKVG SLIEQDNQEE TVESDHVFIG YTNCLDFIKL VKGQGGPKCA PTKASLEFSV RTGTGGEATL 1101: EVLKSGFSFV FEPEENRVPS PRNDDVKGKV KINKTPSANG CFKDQAKGNE SPKGQWQTYI ENSSTNIPSE AHSSQKTGFN GFNGMYSVCV LYEMYSH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)