AT5G16680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G02890.1); Has 6870 Blast hits to 4822 proteins in 413 species: Archae - 8; Bacteria - 605; Metazoa - 3213; Fungi - 704; Plants - 729; Viruses - 19; Other Eukaryotes - 1592 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5467534..5472956 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 142251.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||||||||||
| Length | 1311 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MADRRVGKRQ MGQRGFSKVE SGTCNVCSAP CSSCMHRNVG FTGSKLDESS DENCHGVVGS QCSVNEDDLL PSSMVNAHKS LNNTASEASN LVNSSHDALS 0101: ENAESKETIR CSGISDDSGA AAMTSKPSLS GSRMKHKVSA SANMLDQSSN CIEDQEDGIL SADRAKQLKS GCSNNEIGNK DLADGSALNS DPIPGGSRKD 0201: EVKLESLQNP SSNHDDRVSS EKGNFKEKSR PGGNKERQEP SVEGSTRSGE NRKDGKSSKS SSSNSSAVSE SESDDSEMVE HDVKVCDICG DAGREDLLAI 0301: CSGCSDGAEH TYCMREMLDE VPEGDWLCEE CAEEAEKQKQ EAKRKRETEV TFNTYSSGKR HADKIEAAPD AKRQVVEAST GSPKKSILPR VGALSRETSF 0401: KGLDRLRGKL NHQTSFSDDT ESARSAGSQL QPPKGAFLKS SSFNCSSSKP KVQLMDDAIH PRQKTGKEDT ALDLKVGGFR NVGKSMPSRT TDAGNSGGSD 0501: SQAKMLGSKV YHSQEGKSLK QVKDRNREAN ASASSIDQKL KSRGNSSVSH ANNNRDLKGL QSDGKRGNLT KQVSNLSRNR LENSVVSGGD ISTNEKCSAS 0601: EQSSSQADCK DELPSTSCTG EGMPNHGTVA LQDGLPRSRV PREVGKKSKE AFSKRQRSSL LAGAKGLPSS QKGGQTAESS DTSGVSDSDL STTKNVKEDL 0701: NKGNRLRAAV DAALRKKPSF GKNRVLEQSD ASLVANVDSS SEKTLRNQLP SKMHKNHVSH EGLQGGHPIL WPTSDPYKQT IVTNEKQLIF PGADTIPSRL 0801: VEPEVSFPAV KPVMRDLPLV PSPVMLRSSA IPDHEFIWQG DLEVRKIINQ SAMHSGIQAH LSTLASPRVA EVVNKFPETF SLNEVPRKST WPTQFEKLGT 0901: KEAHIALFFF AKDTESYERN YKPLVDNMIK NDLALKGNLD NVDLLIFASN QLPSNCQRWN MLYFLWGVFQ GRKETNPQKN TSLPTSNVLP RDRDPKELCQ 1001: TSSPSKHLEK GSSLRESSSN GIETRNGTDA RSHENPNNRE SSIERSPSKK EDIALKVEEA GVNHIPPQVT GSNSGDSLVR KVQKVEEQEL GGRKDLPLTV 1101: MGSGIQSHGQ DNPLEKDLNS SQASHRKRPL WELSNPANEN SSAINQKVEL NNDGLCEGSP NKKLKTENGS SSLCRDTSGH DSGIMKKSPK VVFPLDLNDD 1201: SEMVDNLSPL GNDENNNNRR LISGTVPNLE LALGAEETTE ATMGLLPFLS RSSNSGEQSN NSMNKEKQKA DEEEEDDAEV AASLSLSLSF PGTEERKNVN 1301: TPLFLFRDLP R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)