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AT5G16070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TCP-1/cpn60 chaperonin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, zeta subunit (InterPro:IPR012722), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G02530.1); Has 18279 Blast hits to 17892 proteins in 3676 species: Archae - 807; Bacteria - 8603; Metazoa - 2077; Fungi - 1456; Plants - 829; Viruses - 0; Other Eukaryotes - 4507 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ3QeggNOG:KOG0359EMBL:AL391145EMBL:AY128362
EMBL:BT008893EMBL:CP002688EnsemblPlants:AT5G16070EnsemblPlants:AT5G16070.1
entrez:831464Gene3D:1.10.560.10Gene3D:3.30.260.10Gene3D:3.50.7.10
GeneID:831464Genevisible:Q8L7N0GO:GO:0005524GO:GO:0005829
GO:GO:0006457Gramene:AT5G16070.1hmmpanther:PTHR11353hmmpanther:PTHR11353:SF21
HOGENOM:HOG000226733InParanoid:Q8L7N0IntAct:Q8L7N0InterPro:IPR002194
InterPro:IPR002423InterPro:IPR012722InterPro:IPR017998InterPro:IPR027409
InterPro:IPR027410InterPro:IPR027413KEGG:ath:AT5G16070KO:K09498
OMA:EPMDPTLPANTHER:PTHR11353:SF21PaxDb:Q8L7N0Pfam:PF00118
Pfam:Q8L7N0PhylomeDB:Q8L7N0PIR:T51390PRIDE:Q8L7N0
PRINTS:PR00304PRO:PR:Q8L7N0ProMEX:Q8L7N0PROSITE:PS00750
PROSITE:PS00751ProteinModelPortal:Q8L7N0Proteomes:UP000006548Reactome:R-ATH-390471
RefSeq:NP_197111.2scanprosite:PS00750scanprosite:PS00751SMR:Q8L7N0
STRING:3702.AT5G16070.1SUPFAM:SSF48592SUPFAM:SSF52029SUPFAM:SSF54849
TAIR:AT5G16070TIGRfam:TIGR02347TIGRFAMs:TIGR02347UniGene:At.27593
UniGene:At.66728UniProt:Q8L7N0
Coordinates (TAIR10) chr5:-:5247549..5251050
Molecular Weight (calculated) 58931.40 Da
IEP (calculated) 6.17
GRAVY (calculated) -0.18
Length 535 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVRVLNPNA EVLNKSAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLDNFKTPV VMGDEVDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL CIRKPEEAID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVKKIIEL KKKVCGDNDN FVVINQKGID
301: PPSLDLLARE GIIGLRRAKR RNMERLVLAC GGEAVNSVDD LTPESLGWAG LVYEHVLGEE KYTFVEQVKN PNSCTILIKG PNDHTIAQIK DAVRDGLRSV
401: KNTIEDECVV LGAGAFEVAA RQHLLNEVKK TVQGRAQLGV EAFANALLVV PKTLAENAGL DTQDVIISLT SEHDKGNVVG LNLQDGEPID PQLAGIFDNY
501: SVKRQLINSG PVIASQLLLV DEVIRAGRNM RKPTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)