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AT5G16030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY8UeggNOG:ENOG41113F3EMBL:AY093150EMBL:BT003392EMBL:CP002688EnsemblPlants:AT5G16030EnsemblPlants:AT5G16030.1
entrez:831460ExpressionAtlas:Q8RWE0GeneID:831460Gramene:AT5G16030.1hmmpanther:PTHR36748ncoils:CoilPhylomeDB:Q8RWE0
Proteomes:UP000006548RefSeq:NP_568324.1STRING:3702.AT5G16030.3TAIR:AT5G16030UniGene:At.19750UniGene:At.49027UniProt:Q8RWE0
Coordinates (TAIR10) chr5:+:5238242..5240578
Molecular Weight (calculated) 39006.50 Da
IEP (calculated) 5.28
GRAVY (calculated) -1.05
Length 339 amino acids
Sequence (TAIR10)
(BLAST)
001: MALRGDEHEF MNLREWDRRA RLIRENPSSR RFSASYIGSF REDHHKSSFR TTNFNNISST ASSPGYTLKE EIDPSTYSFT NALKALQAKT MYNNREWLAQ
101: EGFALNSKWN EAEKYICNPL SGEVPMECLS AKTLSARSFR NLSTMSAPLH FPSPNPLMNN IAQNKPNNNP NVRVIHEDLY APDPELLALA EKKVVGMKRD
201: VGIQSTTSVD LSSGSPSPAK TPPIMERSLK RHVEADDWPV DINLKVKGQQ QDVKLEEKEK EEEKQDMSNE EDEEEEEEEK QDMSEEDDKE EEDEQEEEEK
301: TKKKKRGPGC FSWVRSRQRQ ARKSKYIFPI CVPHLVKGC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)