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AT5G13480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Encodes a protein with similarity to yeast Pfs2p, an mRNA processing factor. Involved in regulation of flowering time; affects FCA mRNA processing. Homozygous mutants are late flowering, null alleles are embryo lethal.
Computational
Description (TAIR10)
FY; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: pleiotropic regulatory locus 1 (TAIR:AT4G15900.1); Has 97899 Blast hits to 44472 proteins in 1019 species: Archae - 62; Bacteria - 9446; Metazoa - 41432; Fungi - 21528; Plants - 12338; Viruses - 53; Other Eukaryotes - 13040 (source: NCBI BLink).
Protein Annotations
BioGrid:16469DIP:DIP-40405NeggNOG:COG2319eggNOG:KOG0284
EMBL:AL391710EMBL:BT012225EMBL:CP002688EnsemblPlants:AT5G13480
EnsemblPlants:AT5G13480.1entrez:831191ExpressionAtlas:Q6NLV4Gene3D:2.130.10.10
GeneID:831191Genevisible:Q6NLV4GO:GO:0005634GO:GO:0009908
GO:GO:0030154hmmpanther:PTHR22836HOGENOM:HOG000082832InParanoid:Q6NLV4
IntAct:Q6NLV4InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775InterPro:IPR020472PaxDb:Q6NLV4Pfam:PF00400
Pfam:Q6NLV4Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q6NLV4
PRIDE:Q6NLV4PRINTS:PR00320PRO:PR:Q6NLV4PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q6NLV4Proteomes:UP000006548
RefSeq:NP_196852.3scanprosite:PS00678SMART:SM00320SMR:Q6NLV4
STRING:3702.AT5G13480.2SUPFAM:SSF50978TAIR:AT5G13480tair10-symbols:FY
UniGene:At.32063UniProt:Q6NLV4
Coordinates (TAIR10) chr5:-:4326638..4331557
Molecular Weight (calculated) 72246.10 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.80
Length 647 amino acids
Sequence (TAIR10)
(BLAST)
001: MYAGGDMHRG SQMPQPPMMR QSSASSTNIN PDYHHPSGPF DPNVDSFGAK RMRKHTQRRA VDYTSTVVRY IQARTWQRDS RDRTTLQPTP AAAVDMLPTV
101: AYSDNPSTSF AAKFVHASLN KNRCSINRVL WTPSGRRLIT GSQSGEFTLW NGQSFNFEMI LQAHDQPIRS MVWSHNENYM VSGDDGGTLK YWQNNMNNVK
201: ANKTAHKESI RDLSFCKTDL KFCSCSDDTT VKVWDFTKCV DESSLTGHGW DVKSVDWHPT KSLLVSGGKD QLVKLWDTRS GRELCSLHGH KNIVLSVKWN
301: QNGNWLLTAS KDQIIKLYDI RTMKELQSFR GHTKDVTSLA WHPCHEEYFV SGSSDGSICH WIVGHENPQI EIPNAHDNSV WDLAWHPIGY LLCSGSNDHT
401: TKFWCRNRPA DNPRDVLMQN QGYNEQGFGR QPDNFQPSEA SPIPGAFVPG LTRNEGTIPG IGIAMPFDAS SQGDHKQPLP GSMALGAPPL PPGPHPSLLG
501: SGQQQGYQQQ QQHQGHPQQM LPMPNMPHHQ LPPSSHMPLH PHHLPRPMQM PPHGHMPPPS MPMSHQMPGS MGMQGGMNPQ MSQSHFMGAP SGVFQGQPNS
601: GGPQMYPQGR GGFNRPQMIP GYNNPFQQQQ QPPLPPGPPP NNNQQHQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)