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AT5G13420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Aldolase-type TIM barrel family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aldolase-type TIM barrel family protein; FUNCTIONS IN: catalytic activity, transaldolase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transaldolase subfamily (InterPro:IPR004732), Aldolase-type TIM barrel (InterPro:IPR013785), Transaldolase, active site (InterPro:IPR018225), Transaldolase, bacterial/plant type (InterPro:IPR014634), Transaldolase (InterPro:IPR001585); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G13420-MONOMEReggNOG:COG0176eggNOG:KOG2772EMBL:AL163572EMBL:AY056296EMBL:AY087135EMBL:AY114075
EMBL:CP002688EnsemblPlants:AT5G13420EnsemblPlants:AT5G13420.1entrez:831183Gene3D:3.20.20.70GeneID:831183GO:GO:0004801
GO:GO:0005739GO:GO:0005975GO:GO:0006098GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009809
GO:GO:0033587GO:GO:0046686Gramene:AT5G13420.1HAMAP:MF_00493hmmpanther:PTHR10683hmmpanther:PTHR10683:SF6HOGENOM:HOG000226074
IntAct:Q9LYR4InterPro:IPR001585InterPro:IPR004732InterPro:IPR013785InterPro:IPR018225KEGG:00030+2.2.1.2KEGG:ath:AT5G13420
KO:K00616OMA:GLTSNPTPANTHER:PTHR10683Pfam:PF00923PhylomeDB:Q9LYR4PIR:T48589PIRSF:PIRSF036915
ProMEX:Q9LYR4PROSITE:PS01054Proteomes:UP000006548RefSeq:NP_196846.1scanprosite:PS01054SMR:Q9LYR4STRING:3702.AT5G13420.1
SUPFAM:SSF51569TAIR:AT5G13420TIGRfam:TIGR00876TIGRFAMs:TIGR00876UniGene:At.22457unipathway:UPA00115UniProt:Q9LYR4
Coordinates (TAIR10) chr5:-:4302080..4304212
Molecular Weight (calculated) 47701.60 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.17
Length 438 amino acids
Sequence (TAIR10)
(BLAST)
001: MATISNLANL PRATCVDSKS SSSSSVLPRS FVNFRALNAK LSSSQLSLRY NQRSIPSLSV RCSVSGGNGT AGKRTTLHDL YEKEGQSPWY DNLCRPVTDL
101: LPLIARGVRG VTSNPAIFQK AISTSNAYND QFRTLVESGK DIESAYWELV VKDIQDACKL FEPIYDQTEG ADGYVSVEVS PRLADDTQGT VEAAKYLSKV
201: VNRRNVYIKI PATAPCIPSI RDVIAAGISV NVTLIFSIAR YEAVIDAYLD GLEASGLDDL SRVTSVASFF VSRVDTLMDK MLEQIGTPEA LDLRGKAAVA
301: QAALAYKLYQ QKFSGPRWEA LVKKGAKKQR LLWASTSVKN PAYSDTLYVA PLIGPDTVST MPDQALEAFA DHGIVKRTID ANVSEAEGIY SALEKLGIDW
401: NKVGEQLEDE GVDSFKKSFE SLLGTLQDKA NTLKLASH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)