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AT5G12030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : heat shock protein 17.6A
Curator
Summary (TAIR10)
Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.
Computational
Description (TAIR10)
heat shock protein 17.6A (HSP17.6A); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding, response to high light intensity, response to hydrogen peroxide, response to heat, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 17.6 kDa class II heat shock protein (TAIR:AT5G12020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0071eggNOG:KOG0710EMBL:AL163812EMBL:BT004180EMBL:BT006090EMBL:CP002688EMBL:X89504
EMBL:Y14070EMBL:Z27013EnsemblPlants:AT5G12030EnsemblPlants:AT5G12030.1entrez:831076Gene3D:2.60.40.790GeneID:831076
Genevisible:O81822GO:GO:0005829GO:GO:0006457GO:GO:0006972GO:GO:0009408GO:GO:0009644GO:GO:0042542
GO:GO:0051082Gramene:AT5G12030.1hmmpanther:PTHR11527hmmpanther:PTHR11527:SF93HOGENOM:HOG000251751InParanoid:O81822InterPro:IPR002068
InterPro:IPR008978InterPro:IPR031107KEGG:ath:AT5G12030KO:K13993OMA:QEIAMEIPANTHER:PTHR11527PaxDb:O81822
Pfam:O81822Pfam:PF00011Pfscan:PS01031PhylomeDB:O81822PIR:T48562PRIDE:O81822PRO:PR:O81822
PROSITE:PS01031ProteinModelPortal:O81822Proteomes:UP000006548RefSeq:NP_196764.1SMR:O81822STRING:3702.AT5G12030.1SUPFAM:SSF49764
TAIR:AT5G12030tair10-symbols:AT-HSP17.6Atair10-symbols:HSP17.6tair10-symbols:HSP17.6AUniGene:At.21308UniGene:At.71631UniProt:O81822
Coordinates (TAIR10) chr5:-:3884214..3884684
Molecular Weight (calculated) 17686.40 Da
IEP (calculated) 5.40
GRAVY (calculated) -0.60
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLEFGRFPI FSILEDMLEA PEEQTEKTRN NPSRAYMRDA KAMAATPADV IEHPDAYVFA VDMPGIKGDE IQVQIENENV LVVSGKRQRD NKENEGVKFV
101: RMERRMGKFM RKFQLPDNAD LEKISAACND GVLKVTIPKL PPPEPKKPKT IQVQVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)