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AT5G08650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Small GTP-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Small GTP-binding protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), GTP-binding protein LepA, C-terminal (InterPro:IPR013842), Protein synthesis factor, GTP-binding (InterPro:IPR000795), GTP-binding protein LepA (InterPro:IPR006297), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Small GTP-binding protein (TAIR:AT5G39900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:16044EC:3.6.5.-eggNOG:COG0481eggNOG:KOG0462
EMBL:AB006697EMBL:AY092958EMBL:AY128719EMBL:CP002688
EnsemblPlants:AT5G08650EnsemblPlants:AT5G08650.1entrez:830766Gene3D:3.30.70.240
Gene3D:3.40.50.300GeneID:830766Genevisible:Q9FNM5GO:GO:0003924
GO:GO:0005525GO:GO:0006412GO:GO:0009507Gramene:AT5G08650.1
HAMAP:MF_00071HAMAP:MF_03138hmmpanther:PTHR23115hmmpanther:PTHR23115:SF189
HOGENOM:HOG000020624InParanoid:Q9FNM5IntAct:Q9FNM5InterPro:IPR000640
InterPro:IPR000795InterPro:IPR004161InterPro:IPR005225InterPro:IPR006297
InterPro:IPR009000InterPro:IPR009022InterPro:IPR013842InterPro:IPR027417
InterPro:IPR027518InterPro:IPR031157iPTMnet:Q9FNM5KEGG:ath:AT5G08650
KO:K03596OMA:KSVTQGYPaxDb:Q9FNM5Pfam:PF00009
Pfam:PF00679Pfam:PF03144Pfam:PF06421Pfam:Q9FNM5
Pfscan:PS51722PhylomeDB:Q9FNM5PRIDE:Q9FNM5PRINTS:PR00315
PRO:PR:Q9FNM5PROSITE:PS00301PROSITE:PS51722ProteinModelPortal:Q9FNM5
Proteomes:UP000006548RefSeq:NP_196482.2scanprosite:PS00301SMART:SM00838
SMR:Q9FNM5STRING:3702.AT5G08650.1SUPFAM:SSF50447SUPFAM:SSF52540
SUPFAM:SSF54980TAIR:AT5G08650TIGRfam:TIGR00231TIGRfam:TIGR01393
TIGRFAMs:TIGR00231TIGRFAMs:TIGR01393UniGene:At.43790UniProt:Q9FNM5
Coordinates (TAIR10) chr5:-:2806533..2813220
Molecular Weight (calculated) 75441.30 Da
IEP (calculated) 6.64
GRAVY (calculated) -0.13
Length 681 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMASAMDLS SPPTFFLSGT STSSPSLRRL SSISVSGFRR HSNRKLQILC QATAGTEPQS GLSVSGSKLA ARSGQDRLLK VPISNIRNFS IIAHIDHGKS
101: TLADKLLQVT GTVQNRDMKE QFLDNMDLER ERGITIKLQA ARMRYVYEDT PFCLNLIDTP GHVDFSYEVS RSLAACEGAL LVVDASQGVE AQTLANVYLA
201: LENNLEIIPV LNKIDLPGAE PEKVLREIEE VIGLDCSKAI FCSAKEGIGI TEILDAIVQR IPAPLDTAGK PLRALIFDSY YDPYRGVIVY FRVIDGKVKK
301: GDRIFFMASG KDYFADEVGV LSPNQIQVDE LYAGEVGYIA ASVRSVADAR VGDTITHYSR KAESSLPGYE EATPMVFCGL FPVDADQFPD LRDALEKLQL
401: NDAALKFEPE TSSAMGFGFR CGFLGLLHME IVQERLEREY NLNLITTAPS VVYRVNSVNG DTTLCSNPSR LPDPGQRKSV EEPYVKIELL TPKDYIGALM
501: ELAQERRGEF KEMKYIAENR ASILYELPLA EMVGDFFDQL KSRTKGYASM EYSVIGYRES DLIKLDILIN AEMVEPLSTI VHRDKAYSVG RALTQKLKEL
601: IPRQMFKVPI QACIGSKVIA SEALSAIRKD VLAKCYGGDI SRKKKLLKKQ AAGKKRMKAI GRVDVPQEAF MAVLKLEREV L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)