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AT5G06580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-linked oxidases family protein
Curator
Summary (TAIR10)
Encodes a protein with glycolate dehydrogenase activity, which was shown to complement various subunits of the E. coli glycolate oxidase complex. It has not been ruled out that the enzyme might be involved in other catalytic activities in vivo.
Computational
Description (TAIR10)
FAD-linked oxidases family protein; FUNCTIONS IN: glycolate oxidase activity, glycolate dehydrogenase activity, D-lactate dehydrogenase (cytochrome) activity, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase, C-terminal (InterPro:IPR004113), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167); BEST Arabidopsis thaliana protein match is: FAD-linked oxidases family protein (TAIR:AT4G36400.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G06580-MONOMERBioCyc:MetaCyc:AT5G06580-MONOMEREC:1.1.2.4eggNOG:COG0277
eggNOG:KOG1231EMBL:AP002543EMBL:AY045641EMBL:CP002688
EnsemblPlants:AT5G06580EnsemblPlants:AT5G06580.1entrez:830546Gene3D:1.10.45.10
Gene3D:3.30.43.10Gene3D:3.30.465.10GeneID:830546Genevisible:Q94AX4
GO:GO:0004458GO:GO:0005524GO:GO:0005739GO:GO:0008720
GO:GO:0008891GO:GO:0019154GO:GO:0042802GO:GO:0050660
GO:GO:0051596Gramene:AT5G06580.1hmmpanther:PTHR11748hmmpanther:PTHR11748:SF35
HOGENOM:HOG000230995InParanoid:Q94AX4InterPro:IPR004113InterPro:IPR006094
InterPro:IPR016164InterPro:IPR016166InterPro:IPR016167InterPro:IPR016169
InterPro:IPR016171KEGG:ath:AT5G06580KO:K00102OMA:TPRTCGE
PaxDb:Q94AX4Pfam:PF01565Pfam:PF02913Pfam:Q94AX4
Pfscan:PS51387PhylomeDB:Q94AX4PRIDE:Q94AX4PRO:PR:Q94AX4
PROSITE:PS51387ProteinModelPortal:Q94AX4Proteomes:UP000006548RefSeq:NP_568170.1
SMR:Q94AX4STRING:3702.AT5G06580.1SUPFAM:SSF55103SUPFAM:SSF56176
SwissPalm:Q94AX4TAIR:AT5G06580UniGene:At.9066UniProt:Q94AX4
Coordinates (TAIR10) chr5:-:2011486..2016473
Molecular Weight (calculated) 62179.10 Da
IEP (calculated) 6.90
GRAVY (calculated) -0.13
Length 567 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFASKFARS KTILSFLRPC RQLHSTPKST GDVTVLSPVK GRRRLPTCWS SSLFPLAIAA SATSFAYLNL SNPSISESSS ALDSRDITVG GKDSTEAVVK
101: GEYKQVPKEL ISQLKTILED NLTTDYDERY FHGKPQNSFH KAVNIPDVVV FPRSEEEVSK ILKSCNEYKV PIVPYGGATS IEGHTLAPKG GVCIDMSLMK
201: RVKALHVEDM DVIVEPGIGW LELNEYLEEY GLFFPLDPGP GASIGGMCAT RCSGSLAVRY GTMRDNVISL KVVLPNGDVV KTASRARKSA AGYDLTRLII
301: GSEGTLGVIT EITLRLQKIP QHSVVAVCNF PTVKDAADVA IATMMSGIQV SRVELLDEVQ IRAINMANGK NLTEAPTLMF EFIGTEAYTR EQTQIVQQIA
401: SKHNGSDFMF AEEPEAKKEL WKIRKEALWA CYAMAPGHEA MITDVCVPLS HLAELISRSK KELDASSLLC TVIAHAGDGN FHTCIMFDPS SEEQRREAER
501: LNHFMVHSAL SMDGTCTGEH GVGTGKMKYL EKELGIEALQ TMKRIKKTLD PNDIMNPGKL IPPHVCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)