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AT5G03900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Iron-sulphur cluster biosynthesis family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Iron-sulphur cluster biosynthesis family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster biogenesis (InterPro:IPR000361); Has 138 Blast hits to 138 proteins in 58 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IRA4eggNOG:ENOG410XVC6EMBL:EU352000EMBL:EU352001EMBL:EU352002EMBL:EU352003EMBL:EU352004
EMBL:EU352005EMBL:EU352006EMBL:EU352007EMBL:EU352008EMBL:EU352009EMBL:EU352010EMBL:EU352011
EMBL:EU352012EMBL:EU352013EnsemblPlants:AT5G03900EnsemblPlants:AT5G03900.1entrez:831927ExpressionAtlas:B0LQ56GO:GO:0016021
hmmpanther:PTHR10072hmmpanther:PTHR10072:SF43HOGENOM:HOG000035852PaxDb:B0LQ56STRING:3702.AT5G03900.2TMHMM:TMhelixUniProt:B0LQ56
Coordinates (TAIR10) chr5:+:1048338..1050999
Molecular Weight (calculated) 48175.80 Da
IEP (calculated) 8.99
GRAVY (calculated) -0.21
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MACVSTCLIL SPRLTQVGLS SKKPFLIRLR SPVDRYSFPR MLTERCLSTR RKFNRHGIAV VKAASLDKVS GAIKPGGLVE SDKLPTDVRK RAMDAVDECG
101: RRVTVGDVAS RGGLKVTEAQ TALQAIAADT DGFLEVSDEG DVLYVFPRDY RTKLAAKSLR IQIEPFLEKA KGAVDYLARV SFGTALIASI VIVYTSIIAL
201: LSSKSEDDNR QRRRGRSYDS GFNFYINPVD LLWYWDPNYY NRRRAREDEG KGMNFIESVF SFVFGDGDPN QGIEEERWQM IGQYITSRGG VVAADELAPY
301: LDVPSSKSAM NDESYILPVL LRFDGQPELD EEGNILYCFP SLQRTASGSS RRKEYVGKWF DWVADMEKFF KEKKWQFSKT STSERALVIG LGAVNLFGVI
401: VLNTLLNEMS VRPGGFLTFV KNIYPLLQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)