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AT5G02250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.500
mitochondrion 0.500
ASURE: mitochondrion,plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribonuclease II/R family protein
Curator
Summary (TAIR10)
Encodes a exoribonuclease involved in rRNA processing in mitochondria and chloroplasts.Loss of function mutations are pale green and require supplementation with sucrose for germination and early development. Plants are pale green due to defects in chloroplast biogenesis.
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2730 (EMB2730); FUNCTIONS IN: ribonuclease activity, 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: chloroplast organization, rRNA processing, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease II/R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: ribonuclease II family protein (TAIR:AT2G17510.1); Has 7586 Blast hits to 7556 proteins in 2301 species: Archae - 41; Bacteria - 5322; Metazoa - 356; Fungi - 403; Plants - 125; Viruses - 2; Other Eukaryotes - 1337 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-604-MONOMEREC:3.1.13.1eggNOG:COG0557eggNOG:KOG2102EMBL:AK176383EMBL:AL162874EMBL:BT010457
EMBL:CP002688EnsemblPlants:AT5G02250EnsemblPlants:AT5G02250.1entrez:830864Gene3D:1.10.10.10GeneID:830864Genevisible:Q6NQJ6
GO:GO:0000175GO:GO:0003723GO:GO:0005739GO:GO:0006364GO:GO:0008859GO:GO:0009507GO:GO:0009658
GO:GO:0090503Gramene:AT5G02250.1hmmpanther:PTHR23355hmmpanther:PTHR23355:SF5HOGENOM:HOG000029837InterPro:IPR011991InterPro:IPR012340
iPTMnet:Q6NQJ6KEGG:ath:AT5G02250OMA:YLPTGMIPaxDb:Q6NQJ6Pfam:PF00773Pfam:Q6NQJ6PhylomeDB:Q6NQJ6
PIR:T48246PRIDE:Q6NQJ6PRO:PR:Q6NQJ6ProteinModelPortal:Q6NQJ6Proteomes:UP000006548RefSeq:NP_195845.2SMR:Q6NQJ6
STRING:3702.AT5G02250.1SUPFAM:SSF50249TAIR:AT5G02250tair10-symbols:ATMTRNASEIItair10-symbols:EMB2730tair10-symbols:RNR1UniGene:At.4904
UniProt:Q6NQJ6
Coordinates (TAIR10) chr5:+:454902..459063
Molecular Weight (calculated) 90684.00 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.25
Length 803 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSVRAINGC SIIRTATSAG GPPVSLFRHR IQRLRASHLR EFSKLRLNFP LIRADRRFLG NSDAPSCSTC IHSLVESVSE ELESISRRKG SRMRVRASVK
101: VKLTSYGEVL EDKLVNQELE AGLLLEFKKD ADRVLLAVLH RRDGKKNWMV FDQNGVSCSI KPQQITYIVP NVYNFDHTGL TDFLQRAQDN LDPQLLEFAW
201: MELLEKNKPV TPEELAEMIY GRADPLESYC AHFLLSQDEI YFSILESKGS RSIYSPRPTE QVEELLRRQR VKEAEDKEFQ EFIQLLKSAK KAPSHAKPPK
301: SSWLADDKVQ DRIGSLEAYA IDAWASTDQQ KLAGTILKSM GLQKTSVSAL NLLIDIGYFP VHVNLELLKL NLPTHHSEAI TEAAEALLSE SSDIDAVRRI
401: DLTHLKVYAI DVDEADELDD ALSATRLQDG RIKIWIHVAD PARYVTPGSK VDREARRRGT SVFLPTATYP MFPEKLAMEG MSLRQGENCN AVSVSVVLRS
501: DGCITEYSVD NSIIRPTYML TYESASELLH LNLEEEAELK LLSEAAFIRS QWRREQGAVD TTTLETRIKV VNPEDPEPLI NLYVENQADL AMRLVFEMMI
601: LCGEVVATFG SQHNIPLPYR GQPQSNIDVS AFAHLPEGPV RSSSIVKVMR AAEMNFRCPV RHGVLGIPGY VQFTSPIRRY MDLTAHYQIK AFLRGGDNFP
701: FSAGELEGIA ASVNMQSKVV RKLSNTGLRY WVIEFLRRQE KGKKYTALVL RFVKDRIASL LLVEVGFQAT AWVSEGKQVG DEIEVRVEEA HPRDDLILFK
801: EVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)