suba logo
AT5G02180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
vacuole 0.914
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transmembrane amino acid transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G02170.1); Has 5288 Blast hits to 5276 proteins in 360 species: Archae - 20; Bacteria - 185; Metazoa - 1777; Fungi - 1015; Plants - 1487; Viruses - 9; Other Eukaryotes - 795 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0814eggNOG:KOG1303EMBL:AK117421EMBL:CP002688
EnsemblPlants:AT5G02180EnsemblPlants:AT5G02180.1entrez:831862GeneID:831862
GO:GO:0009507GO:GO:0016021Gramene:AT5G02180.1hmmpanther:PTHR22950
hmmpanther:PTHR22950:SF313HOGENOM:HOG000238029InterPro:IPR013057KEGG:ath:AT5G02180
KO:K15015OMA:YAACVEYPfam:PF01490PhylomeDB:Q8GYS4
Proteomes:UP000006548Reactome:R-ATH-425393Reactome:R-ATH-888590RefSeq:NP_195838.2
STRING:3702.AT5G02180.1TAIR:AT5G02180TMHMM:TMhelixUniGene:At.33449
UniProt:Q8GYS4
Coordinates (TAIR10) chr5:+:431034..433544
Molecular Weight (calculated) 59670.80 Da
IEP (calculated) 4.78
GRAVY (calculated) 0.44
Length 550 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLDEEFLHD RDHSFLTDDE ENQAALACSD DEHDGDDDGR RGGENSDSSS PLSRDRSDNN LSDVSNPPWP QSYRQSMDLL TGMTPPSVSF MPQSSSRRLA
101: SSFQKKQQSS FCDSLSSSSS KPLLSQPVPD KEETILPVNP QSQLKLSVTD LPLPEPNLCS FSQSVLNGTN VLCGLGLITM PYAIKESGWL GLPILLFFGV
201: ITCYTGVLMK RCLESSPGIQ TYPDIGQAAF GITGRFIISI LLYVELYAAC VEYIIMMSDN LSGLFPNVSL SIASGISLDS PQIFAILTTL LVLPTVWLKD
301: LSLLSYLSVG GVLASILLGI CLFWVGAVDG IGFHATGRVF DLSNLPVTIG IFGFGYSGHS VFPNIYSSMK DPSRFPLVLV ICFSFCTVLY IAVAVCGYTM
401: FGEAVESQFT LNMPKHFFPS KVAVWTAVIT PMTKYALTIT PIVMSLEELI PTAKMRSRGV SILFRTMLVT STLVVALSVP FFAIVAALIG SFLAMLVALI
501: FPCLCYLSIL KGKLSNTQIG LCIFIIVFGV VSGCCGTYSA ISRLANQMTD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)