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AT4G36690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : U2 snRNP auxilliary factor, large subunit, splicing factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT1G60900.1); Has 66106 Blast hits to 34639 proteins in 1663 species: Archae - 71; Bacteria - 4965; Metazoa - 34951; Fungi - 7331; Plants - 6616; Viruses - 285; Other Eukaryotes - 11887 (source: NCBI BLink).
Protein Annotations
BioGrid:15103eggNOG:ENOG410XP92eggNOG:KOG0120EMBL:AF462805EMBL:AL161589EMBL:AY080711EMBL:AY143980
EMBL:BT000965EMBL:BX827587EMBL:CP002687EMBL:Z99708EnsemblPlants:AT4G36690EnsemblPlants:AT4G36690.1entrez:829822
ExpressionAtlas:O23212Gene3D:3.30.70.330GeneID:829822Genevisible:O23212GO:GO:0000166GO:GO:0000243GO:GO:0000398
GO:GO:0005634GO:GO:0008187GO:GO:0016607GO:GO:0030628GO:GO:0042742GO:GO:0071004GO:GO:0089701
GO:GO:1903241hmmpanther:PTHR23139hmmpanther:PTHR23139:SF61HOGENOM:HOG000180745InParanoid:O23212IntAct:O23212InterPro:IPR000504
InterPro:IPR006529InterPro:IPR012677OMA:AFCYKESPaxDb:O23212Pfam:O23212Pfam:PF00076Pfam:PF14259
Pfscan:PS50102PhylomeDB:O23212PIR:C85433PRIDE:O23212PRO:PR:O23212PROSITE:PS50102ProteinModelPortal:O23212
Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72187RefSeq:NP_195387.1RefSeq:NP_849509.1RefSeq:NP_974695.1SMART:SM00360
SMR:O23212STRING:3702.AT4G36690.1SUPFAM:SSF54928TAIR:AT4G36690tair10-symbols:ATU2AF65ATIGRfam:TIGR01642TIGRFAMs:TIGR01642
UniGene:At.21204UniProt:O23212
Coordinates (TAIR10) chr4:-:17294139..17297609
Molecular Weight (calculated) 63555.00 Da
IEP (calculated) 8.11
GRAVY (calculated) -0.93
Length 573 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)