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AT4G34020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Class I glutamine amidotransferase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Class I glutamine amidotransferase-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DJ-1 (InterPro:IPR006287), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G53280.1); Has 6311 Blast hits to 3877 proteins in 1442 species: Archae - 143; Bacteria - 5053; Metazoa - 521; Fungi - 51; Plants - 234; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0693eggNOG:KOG2764EMBL:AK317479EMBL:AL021961EMBL:AL031032EMBL:AL161584EMBL:AY074295
EMBL:AY096711EMBL:CP002687EnsemblPlants:AT4G34020EnsemblPlants:AT4G34020.1entrez:829548Gene3D:3.40.50.880GeneID:829548
Genevisible:Q8VY09GO:GO:0003713GO:GO:0005829GO:GO:0006357GO:GO:0009507GO:GO:0009658GO:GO:0019172
GO:GO:0019243GO:GO:0019249GO:GO:0070301hmmpanther:PTHR11019hmmpanther:PTHR11019:SF49HOGENOM:HOG000077645InParanoid:Q8VY09
InterPro:IPR002818InterPro:IPR006287InterPro:IPR029062KEGG:ath:AT4G34020OMA:KKITCHPPaxDb:Q8VY09Pfam:PF01965
Pfam:Q8VY09PhylomeDB:Q8VY09PIR:T05230PRIDE:Q8VY09PRO:PR:Q8VY09ProteinModelPortal:Q8VY09Proteomes:UP000006548
RefSeq:NP_001031787.1RefSeq:NP_195128.2SMR:Q8VY09STRING:3702.AT4G34020.1SUPFAM:SSF52317TAIR:AT4G34020TIGRfam:TIGR01383
TIGRFAMs:TIGR01383UniGene:At.31529UniProt:Q8VY09
Coordinates (TAIR10) chr4:-:16298553..16300897
Molecular Weight (calculated) 50989.70 Da
IEP (calculated) 8.99
GRAVY (calculated) -0.02
Length 472 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSLGYSISM IASLSPTLME SRLISSMGCV SMTVAPSFSS VSVVSSSLGT TRRDRTLKLR SSMSPGMVTT LDSDVGVGSS ATTKKVLVPI GYGTEEIEAV
101: VLVDVLRRAG ADVTVASVEQ KLEVEGSSGT RLLADVLISK CADQVYDLVA LPGGMPGAVR LRDCEILEKI MKRQAEDKRL YGAISMAPAI TLLPWGLLTR
201: KRTTGHPAFF GKLPTFWAVK TNIQISGELT TSRGPGTSFQ FALSLAEQLF GETTAKSIEE FLLLRDGYQN PKNKEFNSID WSLDHTPRVL IPVANGSEAV
301: ELVSIADVLR RAKVDVTVSS VERSLRITAF QGTKIITDKL IGEAAESSYD LIILPGGHTG SERLQKSKIL KKLLREQHES GRIYGATNSS STVLHKHGLL
401: KEKRTTVYPS ESDEPMNQQM IEGAEVVIDG NVITSLGLAT VTKFSLAIVS KLFGHARARS VSEGLVHEYP RQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)