AT4G30690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Translation initiation factor 3 protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Translation initiation factor 3 protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cell wall, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor 3, N-terminal (InterPro:IPR019814), Translation initiation factor 3, conserved site (InterPro:IPR019813), Translation initiation factor 3, C-terminal (InterPro:IPR019815), Translation initiation factor 3 (InterPro:IPR001288); BEST Arabidopsis thaliana protein match is: Translation initiation factor 3 protein (TAIR:AT2G24060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14960742..14962328 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31825.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.11 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 281 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGITSTVGF NAILAGATKT VSHPVKSKLF GLRLCVPEFS IVSLSPYHHR RCPAITCRYG GGGGGGSRFP GDRRGRQKES EDDDSLDISA IRSATVRLID 101: DQQNMIGLVS KEEAVRRAED AELDLVILSP DADPPVVRMM DYSKYRYEQQ KRKKEQQKKT TRMDLKELKM GYNIDQHDYS VRMRAARKFL QDGDKVKVIV 201: NMKGRENEFR NIAIELLRRF QTEIGELGTE ESKNFRDRNL FIVLVPNKEV IRKVQEPPPK KKKKPADDKV SAANITATQD I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)