AT4G28570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Long-chain fatty alcohol dehydrogenase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Long-chain fatty alcohol dehydrogenase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: Long-chain fatty alcohol dehydrogenase family protein (TAIR:AT1G03990.1); Has 3734 Blast hits to 3404 proteins in 773 species: Archae - 46; Bacteria - 2451; Metazoa - 41; Fungi - 246; Plants - 166; Viruses - 0; Other Eukaryotes - 784 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14119548..14121923 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81964.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.45 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 748 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDVRRRNRG HPLLRSKKRG EGYNHGFSPS QIQSLAVICQ TFLPPETTSE QQAVNSFHVA SSTQPPFTDE VAEMIVKNGR SEAVKVLRII LMILSFRFGT 101: LLLCGSLCLD KSWPFVLKFS QLPLDKREAI LRNWSRQSGF LLPFRITFFL AKFYTLFYFF SQTDENLKNP ALEAIGYCID GTERSSNKKS EADEKRRPLE 201: KGIIETMHES DVTITQSLTE KGVHVARDDG DNVYRIRCDA VVVGSGSGGG VAAANLAKAG LKVLVLEKGN YFTAHDYSGL EVPSMLELYE KGGLLTTVDG 301: KFMLLAGSAV GGGTAVNWSA SIRTPDHVLQ EWSEGSKIKF FGSQEYQSAM DEVTIRIGVT ERCVKHGFQN QVLRKGCERL GLQVESVPRN SPEDHYCGLC 401: GYGCRAGAKN GTDQTWLVDA VENGAVILTG IKAERFVLVD NTSSSNERKK RCVGVFASSV GGKIGKKFII EARVTVSSAG SLLTPPLMLS SGLKNPNIGR 501: NLKLHPVLMT WGYFPEKDSE FSGKMYEGGI ITSVHHMNDT ESGCKAILEN PLIGPASYAG LSPWVSGPDL KERMIKYGRT AHLFALVRDL GSGEVMMENE 601: VTYRTTKKDR ENLRAGLRQA LRVSVAAGAV EVGTYRSDGQ KMKCEAITKE AMEEFLDEVD AVGGVGTKGE YWTTYFSAHQ MGSCRMGVTA EEGALDENGE 701: SWEAEGLFVC DGSILPSAVG VNPMITIQST AYCISSKIVD SLQNKTKV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)